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job-server has [four dashboards](https://jobs.opensafely.org/staff/dashboards/) that could be transferred to Grafana[^1] (i.e. https://dashboards.opensafely.org/). Following a quick poll,[^2] it looks…
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Hi,
This issue may be relevant to 'Support Numpy 2.0' issue opened by @h-mayorquin yesterday. Looks like `np.issctype' was removed from Numpy 2.0 which is resulting in a spikesorting error. It says '…
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I started getting this error recently when computing extension to my analyzer. What is curious to me is that this happens when processing a sorting from kilosort2.5 and kilosort4, but not kilosort3
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This is a meta-issue recording action items from a review of biomedical articles that cite SciPy and the results of a survey sent to authors of over 50 of these papers. In some cases, we can offer to …
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after the update to the new stable version, it became impossible to predict whether `SorterAnalyser` (aka `WaveFormExtractor`) will crash due to module dependencies or not. Moreover, I couldn't find a…
rat-h updated
3 months ago
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Hi,
I first preprocessed the neuropixel data from spikeglx with highpass filter, phase shift, concatenation, and motion correction.
I passed the data to multiple sorters including Kilosrot 3, kilo…
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As a user of phoenix, I would like a persistent backend - notably a way to
- Resume phoenix on previous collection of data
- Keep track of evaluation results
## Spikes
- [x] #2158
- [x] #2335
- [x] …
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when trying to run kilosort4 i get an error that more values were returned by "get_run_parameters(ops)" than expected in kilosort4.py.
this was fixed by adding 2x "_" to the output variables.
spik…
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Calling `si.sorters.run_sorter()` with either `folder` or `output_folder` input argument resulted in the error below
```
File "/opt/conda/lib/python3.10/site-packages/element_array_ephys/spike_s…
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Hi there,
I am trying to analyze data that I did not sorted myself. I just have the recording and Phy folder outputs to get the sortings.
I also have "bad_periods" being tuples (start_sample, …