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I've got some single-cell RNA-seq counts (normalised with DESeq2) which I'd like to model with your mixture of continous and discrete components. I'm having some problems getting any sensible p-values…
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**Reported by rozyang on 16 Nov 43622165 12:23 UTC**
I tried to build KNN for the mnist8m dataset (a larger version of MNIST, with 8 million samples). The dataset is available at
http://ml.nec-labs.c…
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The only thing I've thought of is to use the pair hmm as a preclustering step, and just lower/loosen the single-linkage clustering cutoff to make sure we never cluster when we shouldn't, and then pass…
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Hi there,
I'm currently trying to create a few Bayesian networks for some benchmarking I am doing. However I have run into an issue that I have been unable to resolve. My setup is described below.
I…
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I quote Philippe
"am a bit confused about the distinction between reporting spatial spread over time and well-supported rate. In the second paragraph under "Spatial Dynamics of FMDV in South America",…
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Hi,
I see that you can define the graphical model based on tables of probabilities of variables (CPD) for Bayes-Scala. Is it possible to define factors with discriminative features, with arbitrary fe…
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Hi,
Using eqtlbma-1.2.2, I first run eqtlbma with the parameters corresponding to BF_{BMA}, that is, "--bfs all --pbf all" with 4 subgroups and everything seems to run smoothly and all BFs are reporte…
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"The issue of whether or not to include a Bayes factor computation using a sampling method is, frankly, a bit of a conundrum. I am not entirely comfortable with it, as my own experience with calculati…
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Dear Johannes
It seems that the analyse module break at negative log evidence.
def _read_error_line(self, l):
#print '_read_error_line', l
name, values = l.split(' ', 1)
…
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As discussed in [this thread](http://groups.google.com/group/julia-dev/browse_thread/thread/9f79ed4f8334830a), Julia needs to support data with missing values. Current thinking seems to be to create a…