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I'm analysing single-ended reads and I get the following error:
```
Level 30:
Level 30: Command map started at 2019-03-14 14:21:38.988822
Level 30:
Level 30: ------------ Mapping Parameters ---…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/boyinggong/MethCP
Confirm the following by editin…
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Hello,
I've been trying to launch a test bismark run on 10000 reads with the following code:
`bismark -u 10000 --bowtie2 --genome_folder /Homo_sapiens.GRCh38.dna_sm.primary_assembly/ -1 bsseq_S…
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Four Terms inferred as owl:Nothing using Hermit reasoner. Need to be fixed.
1. [comet assay](http://purl.obolibrary.org/obo/OBI_0302736)
possible issue:
`(realizes some (function and ('inheres …
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Hello,
I have a dataset with 4 data types, including methylation data.
Here (as in most cases), methylation data have a bimodal distribution.
I used gaussian as likelihood (in ModelOptions$likeli…
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Hi,
Is there any way to extract the per read results (detect_modifications command via the --per-read-statistics-filename option) into a text file? I would like to check the methylation percentage …
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Hi Felix, it's me again.
I have RRBS data set from a NextSeq run, one from breast cancer (human) and one from vid plants.
I already had mentioned this experiments in a previous thread:
https://git…
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I deduplicated my files in `bismark`:
> The script deduplicate_bismark is supposed to remove alignments to the same position in the genome from the Bismark mapping output (both single and paired-en…
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I want to describe general methylation trends, irrespective of pCO2 treatment in my *C. virginica* gonad data. Claire and Mac both had sections in their papers where determined if a CpG locus was meth…