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Our collaborator wants to compute the axon density in his images. We have a shared OneDrive folder with him containing hundreds of images; segmentations and morphometrics are already computed. He want…
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I recently read your paper and am interested in it, but I only found metadata of the scATAC-seq dataset in this repository and scRNA-seq in [HGDA](https://www.reproductivecellatlas.org/gonads.html).
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> Sample = out
> Reference annotation index = mm10.exclusive.idx
> Minimum number of genes required = 200
> Minimum number of counts required = None
> Number of threads = 1
>
> INFO : Loadin…
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Hi Sid,
Thanks for your wonderful work! When I ran the code, I met a few questions:
1. some annotations were missing. For example, "Head_9.csv" in pc_assembly. A similar situation also appeared in…
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**Is your feature request related to a problem? Please describe.**
I want to use vott to label images for a yolov5 model.
Instead of having to convert in an external program or service it would be n…
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(Possibly not the right place for this ticket, but convenient to post here)
SynGO models are currently failing a bunch of P2GO checks. These checks were built over many years and reflect agreed GO…
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`Entry_Related_File` and `ihm_starting_model_details` are tables where users can upload files belonging to an entry, in addition to the primary mmCIF and image files.
Unique constraints in these t…
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Hi,
I'm setting up pySCENIC for generating regulons from two Fly brain scRNAseq datasets we generated. The goal is to reproduce to some extent what was done in the aging Drosophila brain atlas (Dav…
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**Describe the bug**
The tool only considers the raw jpeg and ignore rotation attribute. Will the label rects follow the raw coordinates or rotated in the frameworks consuming the output. Even if it …
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Hello, thank you for making such a good tool. First, I looked it up, but... I'm sorry to ask you this question because I can't find a way.
I used idat files in **pre_process using the script and re…