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I'm working on a generalizable pipeline for metagenomics that has bacteria, archaea, eukaryotes, and viruses.
The `download_eggnog_data.py` script asks for taxonomy. Would I download each of these…
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## Describe the bug
Please add a clear and concise description of what the bug is.
I was trying to organize the files and moved the program to a different folder, but it wouldn't open beca…
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In [`f1fa333`](https://github.com/fullama/upptime/commit/f1fa3339e35a05bb68be222336a21f89f768e6ea
), Spire (https://spire.embl.de) was **down**:
- HTTP code: 0
- Response time: 0 ms
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https://github.com/PietroMSB/DrugSideEffects/blame/ac8d5cf1413d3786ea446b7e73496cc36ee909d8/Datasets/Nuovo/extract_dataset.py#L15
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Here are all the genotype comments, with links to the genotype pages: [genotype_comments.txt](https://github.com/pombase/website/files/14771447/genotype_comments.txt)
Here are some examples:
…
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The following terms don't map to any gene, but should. Need to look into.
>more PRO_GPI.dat | grep taxon:10090 | grep -v protein_complex | perl ~dnatale/get_col_by_char.pl '\t' 2 3 8 9 | grep -v M…
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Hi,
I would like to run this workflow using changin the /datastore and /workflow folders to /nvme/datastore and /nvme/workflow on my host.
This is the change I did on the workflow.ini file:
`common_d…
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#### What is the problem?
We should register our prefix (`datalad:`) which would disambiguate the DataLad UUID(is it possible? or only by path?) to the location(s?) of the dataset.
I wondered e…
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Right now there are 155 database cross-references in UniProt:
- http://www.uniprot.org/database/
I want to discuss here
- [ ] which ones are essential
- [ ] a reasonable, flexible model for cross-ref…
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Annotations from
https://www.pombase.org/reference/PMID:25720772
are duplicated on the publication page (but appear to be filtered on the gene page)