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Thank you very much for this great package. I am interested in using it to fit ecological data that has various replicate measures per time point. Before trying the particle filtering I am running som…
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Similar to functional testing, we could replace the notebook testing cronjob on travis with tests on a local machine (but scheduled by azure).
For example, we could fire off a test of a single notebo…
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Write a test ODE set in the form of generalized Lotka-Volterra.
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---
id: tellurium
version: 2.2.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_tellurium/57d621c9d95e0c9cc3063f24b60bfc44f2b4bd87/biosimulators.json
specificationsPa…
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---
id: pysces
version: 0.9.9
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_PySCeS/1fa99758dfc575f91a13f35547bfcb71166e9f9a/biosimulators.json
specificationsPatch:
…
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https://github.com/ChrisRackauckas/universal_differential_equations/blob/dd836890e7e09923a0ae9ed8b6b49d2ee64b2e6a/SEIR_exposure/seir_exposure.jl#L228
Ψ = SInDy(X̂[:, 2:end], L̂[2:end], basis, thres…
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currently implemented simulators have ground truth posterior methods. they dont belong to the simulator and should move to utils.
janfb updated
4 years ago
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https://github.com/mackelab/sbi/blob/b38cc27fb33f4743f3c33e01e69ed5813146d09f/sbi/simulators/simutils.py#L150
UserWarning: To copy construct from a tensor, it is recommended to use sourceTensor.clo…
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Implement a `sensitivity(::ODEProblem,tspan)` which applies Morris global sensitivity analysis on a ParameterizedFunction.
http://www.abe.ufl.edu/Faculty/jjones/ABE_5646/2010/Morris.1991%20SA%20paper…
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My issue is about the *solve_ivp* function in combination with the optional *"args"* argument.
The issue occurs when testing the lotka volterra example from the [docs](https://docs.scipy.org/doc/…