-
```
What steps will reproduce the problem?
1. In beauti, specify Tree Prior: Speciation Yule Process,
2. Specify an Initial Value for prior treeModel.rootHeight in BEAUTI
3. generate xml file, and run…
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Seems like an obvious question one could ask is "what is the signal for density dependence?", which could be assessed by running the analysis with and without that parameter. In addition, could allow …
-
```
What steps will reproduce the problem?
1. In beauti, specify Tree Prior: Speciation Yule Process,
2. Specify an Initial Value for prior treeModel.rootHeight in BEAUTI
3. generate xml file, and run…
-
```
need to review the equation for res = ... in line 194 in
BirthDeathSerialSamplingModel. It is getting INF by given the xml
==========================
I specify the epidemiological model in Bea…
-
```
need to review the equation for res = ... in line 194 in
BirthDeathSerialSamplingModel. It is getting INF by given the xml
==========================
I specify the epidemiological model in Bea…
-
```
need to review the equation for res = ... in line 194 in
BirthDeathSerialSamplingModel. It is getting INF by given the xml
==========================
I specify the epidemiological model in Bea…
-
@andschwa our getgamete function in the genome class returns 2 mutated gametes per creature into the gamete pool. This is an issue because when dealing with proximity the creature will place 2 gamete…
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After approximately 90 second of execution, the game halts. It looks like a box2d assertion error, triggered by the Draw() function in the evolvedTD file.
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Need someone (or several people) who are not me go through two main BAMMtools documentation sections: postprocess and rateshifts. See if these examples work as coded in sphinx and if you can follow t…
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Right now, you are using sim.bdtree() to simulate a tree. I suggest using sim.bd.taxa.age() from TreeSim instead.
The reason is that sim.bdtree() seems to have the property of stopping the simulatio…