beast-dev beast-mcmc issues

beast-dev / beast-mcmc

Bayesian Evolutionary Analysis Sampling Trees

http://beast.community

GNU Lesser General Public License v2.1

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issues

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Shrinkage local clock does not start pathsampling

#1209 dbajpp0 opened 1 week ago
0
How to use TreeMarkovJumpHistoryAnalyzer

#1208 RicardoRH96 opened 1 month ago
1
Fix failing junit tests with from new CI setup

#1207 Joon-Klaps closed 1 month ago
0
Refactor github ci to use matrix strategy instead.

#1206 Joon-Klaps closed 1 month ago
2
Refactor github ci to use matrix strategy instead.

#1205 Joon-Klaps closed 1 month ago
2
Missing partition when generated with the "Create partition from trait" button in the "Traits" window

#1204 sdellicour closed 1 month ago
1
Fix tests for OU gradients, `BigFastTreeIntervals` error

#1203 pbastide closed 2 months ago
7
Wrong path to logcombiner executable

#1202 pedrosenna closed 2 months ago
1
Error parsing '<gmrfBlockUpdateOperator>' element with id, 'null'

#1201 ClarabellaFantilli opened 2 months ago
0
Missing main .log file

#1200 GianRos opened 3 months ago
0
How do I turn opt out of beagle?

#1199 jacklo225 closed 1 month ago
1
Error parsing '<scaleOperator>' element with id, 'null':

#1198 dskwei opened 3 months ago
2
BEAUti says "The BEAST XML is incomplete"

#1197 bredelings opened 3 months ago
0
Path text fields in BEAUti MCMC tab get too long if the stem text is long

#1195 rambaut closed 3 months ago
1
Tipdate sampling couldn't be turned off if tip date precision varied

#1194 rambaut closed 3 months ago
1
Memory leak in DefaultTreeModel

#1193 rambaut closed 3 months ago
2
Every rose

#1192 jtmccr1 opened 4 months ago
0
identify possibly latent, long-standing bug ... or I am a fool

#1191 rambaut opened 4 months ago
0
HMC Clock Model doesn't produce any mention or citation

#1190 rambaut opened 4 months ago
0
Cleaning up old stuff - including old likelihood native libraries

#1189 rambaut opened 5 months ago
2
Implement empirical trees in BEAUti

#1188 rambaut closed 5 months ago
0
Put more information in the operator log

#1187 rambaut opened 5 months ago
1
Idea: Get BEAUti to load an operator log and use it to weight the operators

#1186 rambaut opened 5 months ago
0
BEAUti skygrid creating gmrfGridBlockUpdateOperator with scaleFactor="-1.0"

#1185 rambaut closed 5 months ago
1
Implementing more protein models into BEAUTI/BEAST

#1184 JirkaMP opened 6 months ago
3
Ant fails to build on latest release

#1183 Brusselmans-Marius closed 6 months ago
0
A fatal error has been detected by the Java Runtime Environment:

#1182 guoqiangu closed 6 months ago
3
Allow a secondary tree prior for a subset of data

#1181 rambaut opened 7 months ago
0
TreeAnnotator gives unexpected error when burnin is bigger than the number of trees

#1180 rambaut closed 7 months ago
1
remove `libjri.jnilib`

#1179 msuchard opened 7 months ago
1
Import traits directly into BEAUti broken

#1178 gabehassler closed 6 months ago
2
Update/fix example files

#1177 rambaut opened 7 months ago
0
v1.10.4 Error parsing '<treeDataLikelihood>' element with id, 'default.treeLikelihood':

#1176 xinaoma closed 7 months ago
0
Default to sampling uniformly from precision when parsing/importing dates with variable precisions in BEAuti

#1175 plemey closed 7 months ago
1
Keep calculation of the determinant in log-scale

#1174 aki-nishimura closed 7 months ago
0
I would like to ask if BEAST works with NVIDIA 10-series graphics cards and if it supports multiple cards?

#1173 pikkazz closed 7 months ago
0
No longer able to generate xml files in beauti (MacOS Sonoma & Monterrey)

#1172 jnarag closed 7 months ago
10
Can't launch Beauti or BEAST 1.10.4 in ARM Mac

#1171 RicardoRH96 closed 7 months ago
5
ambiguities in 'constant site patterns'

#1170 plemey closed 7 months ago
1
Covariates for skygrid in BEAuti

#1169 plemey opened 8 months ago
0
Marginal Likelihood Performance Metrics

#1168 Tay-j closed 9 months ago
0
BEAUti won't allow me to save .xml file due to priors

#1167 MacauleyLockeml closed 7 months ago
5
How to speed beast on linux with only CPU

#1166 rookie-wzy closed 7 months ago
1
can not be opened for pathSamplingAnalysis element

#1165 liamxg closed 7 months ago
1
beastgen's template file for discrete trait analysis

#1164 leke-lyu closed 7 months ago
1
Exception in thread "Thread-0" java.lang.RuntimeException: An error was encountered. Terminating BEAST

#1163 ypchan closed 1 year ago
1
how to use "TaxaOriginTrait.java" ?

#1162 liamxg closed 7 months ago
1
Combine discrete traits into one partition?

#1161 sanderdebacker closed 1 year ago
1
Add path to beagle in Mac binary build scripts

#1160 rambaut closed 1 year ago
1
error when using ant

#1159 liamxg closed 1 year ago
3