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beast-dev
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beast-mcmc
Bayesian Evolutionary Analysis Sampling Trees
http://beast.community
GNU Lesser General Public License v2.1
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BEAUti relative rate specification for partitions
#1158
plemey
closed
1 year ago
2
unable to place discrete trait on separate partition
#1157
bpetros95
closed
1 year ago
5
TreeAnnotator v1.10.5 very slow in setting node heights when generating MCC tree
#1156
ViralVerity
closed
7 months ago
6
java.lang.NoClassDefFoundError: org/netlib/blas/BLAS
#1155
jrom99
closed
1 year ago
2
Continue of the issue 1153 for the unresolved promblem
#1154
biozhajie
closed
1 year ago
1
Change the initial value for the mutation rate to overcome the error of bad likelihood of the initial state
#1153
biozhajie
closed
1 year ago
2
Dummy check for unaligned sequences in alignment
#1152
rmcolq
closed
1 year ago
3
The MCMC sampling are still very poor after 200 million of MCMC samplings
#1151
biozhajie
closed
1 year ago
3
TreeMarkovJumpHistoryAnalyzer, how to use?
#1150
abulenciamiguel
closed
1 year ago
1
fix: typo
#1149
starsareintherose
closed
1 year ago
0
fixes ant compile error when default encoding is ASCII
#1148
gabehassler
closed
1 year ago
0
Error when runing with BEASTv1.10.5pre_thorney_0.1.1
#1147
biozhajie
closed
1 year ago
0
How to implement relaxed clock model when using thorneytreelikelihood in BEAST v1.10.5 pre-release of ThorneyTreeLikelihood v0.1.2
#1146
biozhajie
closed
1 year ago
0
installation of releases beyond v1.10.4
#1145
cecileane
closed
1 year ago
2
Beast 1.10.4 program error message Total = - Infinity
#1144
luguohui1999
closed
1 year ago
1
Sample from Prior : one or more traces contain invalid values and are not able to be displayed
#1143
qianxuans
closed
1 year ago
4
formatting tags and release please
#1142
starsareintherose
closed
1 year ago
4
lost the records in log file and trees file
#1141
AJFeng
closed
1 year ago
1
Low ESS value for treeModel.rootHeight, age(root) and treeLength estimated by BEASTv.1.10.5pre_thorney_v0.1.1
#1140
bingyinglee
closed
2 years ago
1
State 0 to 1 takes too long (stuck?) with Thorney BEAST
#1139
abulenciamiguel
closed
2 years ago
1
ThorneyTreeLikelihood=-Inf,
#1138
abulenciamiguel
closed
2 years ago
2
Including Discrete traits in Thorney BEAST
#1137
abulenciamiguel
closed
2 years ago
0
Fatal exception: Cannot invoke "dr.evomodel.tree.TreeModel$Node.getHeight()"
#1136
Leliana42
closed
1 year ago
2
extending the epochal discrete CTMC model
#1135
jsigao
opened
2 years ago
0
Can't implement branchrate model in thorney beast
#1134
joelnitta
closed
2 years ago
3
XML file in thorney beast tutorial doesn't work
#1133
joelnitta
closed
2 years ago
3
asymmetric Q matrix normalization extension
#1132
jsigao
closed
2 years ago
1
Automate versioning for build process
#1131
jtmccr1
closed
7 months ago
1
asymmetric Q matrix normalization bug fixes
#1130
jsigao
closed
2 years ago
4
extending the epochal discrete CTMC model
#1129
jsigao
closed
2 years ago
2
epochal discrete CTMC model bug fixes
#1128
jsigao
closed
2 years ago
4
MC^3 bugfixes
#1127
adamallo
closed
2 years ago
0
(Unknown Source) error using beastgen with SG-thorney.template
#1126
AAMCgenomics
closed
3 years ago
3
G-Wishart Distribution
#1125
grillopf
closed
3 years ago
2
G-Wishart Distribution
#1124
grillopf
closed
3 years ago
4
G-Wishart Distribution
#1123
grillopf
closed
3 years ago
1
WGS SNP data to infer TMRCA of different samples within the sample population
#1122
OmonkeyGOD
closed
1 year ago
1
Bump xstream from 1.4.8 to 1.4.18 in /packaging_tools/windows/launch4j/maven
#1121
dependabot[bot]
closed
2 years ago
0
Beauti from BEASTv1.10.5pre_thorney_0.1.1
#1120
LesterJP
closed
2 years ago
0
XML file not generated
#1119
LesterJP
closed
2 years ago
0
Rescinded
#1118
cdb234
closed
3 years ago
0
Renamed IterativeGibbsIndependentCoalescentOperator to …
#1117
KanikaNahata
closed
3 years ago
0
An iterative and independent coalescent sampler especially for trees especially with topological constraints
#1116
KanikaNahata
closed
3 years ago
0
GitHub actions
#1115
gabehassler
closed
3 years ago
0
Bump xstream from 1.4.8 to 1.4.17 in /packaging_tools/windows/launch4j/maven
#1114
dependabot[bot]
closed
3 years ago
1
Tree prior generation has failed: Index 5 out of bounds for length 5
#1113
niconm89
closed
3 years ago
4
Update LogCombiner.java
#1112
ViralVerity
closed
3 years ago
0
GMRFfskyride interval refactor
#1111
jtmccr1
closed
3 years ago
4
Bump xstream from 1.4.8 to 1.4.16 in /packaging_tools/windows/launch4j/maven
#1110
dependabot[bot]
closed
3 years ago
1
this is the old way and seems broken
#1109
athos00
closed
3 years ago
0
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