beast-dev beast-mcmc issues

beast-dev / beast-mcmc

Bayesian Evolutionary Analysis Sampling Trees

http://beast.community

GNU Lesser General Public License v2.1

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error?

#1108 BEAST-Community closed 1 year ago
0
enable multi-GPU support?

#1107 biocyberman closed 1 year ago
1
TempEst v1.5.3 release is uploaded by mistake?

#1106 biocyberman closed 1 year ago
1
Bump ant from 1.8.2 to 1.10.9 in /packaging_tools/windows/launch4j/maven

#1105 dependabot[bot] closed 2 years ago
0
BEAGLE function, create, returned error code -6 (No resource matches requirements) but BEAGLE installed

#1104 dl0096 closed 1 year ago
2
Bump xstream from 1.4.8 to 1.4.15 in /packaging_tools/windows/launch4j/maven

#1103 dependabot[bot] closed 3 years ago
1
removed conflicting and deprecated parsers in old_parsers.properties, and put it back for backwards compatibility

#1102 xji3 closed 3 years ago
0
Using the AutocorrelatedClock

#1101 sebastianduchene opened 3 years ago
0
beast -citation requires X11 ??

#1100 EricDeveaud closed 1 year ago
2
encoding utf8 required on some OSes

#1099 EricDeveaud closed 1 year ago
1
running examples :: Error

#1098 EricDeveaud closed 7 months ago
1
Bump xstream from 1.4.8 to 1.4.13-java7 in /packaging_tools/windows/launch4j/maven

#1097 dependabot[bot] closed 3 years ago
1
Wasteful re-computation of gradients within NUTS operator

#1096 aki-nishimura closed 1 year ago
2
Calculation of MRCA heights in a starting tree appears to be wrong

#1095 davidcerny closed 4 months ago
1
Update some of the *_build files

#1094 maxbiostat closed 7 months ago
0
Reconstructing ancestral change History by accomodating dates and locations info

#1093 ISskandaR closed 7 months ago
2
Bump ant from 1.8.2 to 1.9.15 in /packaging_tools/windows/launch4j/maven

#1092 dependabot[bot] closed 3 years ago
1
moving conditionalProbabilities to log space in AncestralStateBeagleT…

#1091 jtmccr1 closed 4 years ago
1
Bump commons-beanutils from 1.7.0 to 1.9.4 in /packaging_tools/windows/launch4j/maven

#1090 dependabot[bot] closed 2 years ago
0
Option for returning non-zero exit code on uncaught exception in thread

#1089 gabehassler closed 4 years ago
0
Neither the OS X 1.10.4 nor the conda installation of BEAST recognize the beagle libraries

#1088 drdna closed 1 year ago
1
Java.lang.OutOfMemoryError: Requested array size exceeds VM limit

#1087 weipenegHU closed 1 year ago
5
Bump xstream from 1.4.8 to 1.4.10-java7 in /packaging_tools/windows/launch4j/maven

#1086 dependabot[bot] closed 4 years ago
1
fixing junit tests

#1085 gabehassler closed 4 years ago
0
ASYMQUADModel parsing error

#1084 tjhaxton closed 7 months ago
3
Parsing error for BEAUTi-generated xml file for directional random walk model

#1083 mlewinsohn opened 4 years ago
2
Premature codon position pattern filtering for robust counting when an entire alignment column is non-nucleotide.

#1082 evogytis closed 4 years ago
2
calculateRootLogLikelihoodsByPartition Error code -7

#1081 gkarthik closed 4 years ago
1
Input files preparation using bacterial whole genomes

#1080 darwinbandoy closed 1 year ago
1
Can not fully use GPU?

#1079 LauraVP1994 opened 4 years ago
8
issue with data simulation under codon Markov-modulated model

#1078 GuyBaele opened 4 years ago
0
Source code checksum changed

#1077 fxcoudert closed 4 years ago
1
Append patterns

#1076 jtmccr1 closed 4 years ago
0
first stab at integrated prior; works somewhat

#1075 maxbiostat opened 5 years ago
0
release asset name coherency

#1074 ysagon closed 1 year ago
0
making RandomWalkGammaPrecisionGibbsOperator suitable for power poste…

#1073 maxbiostat closed 5 years ago
2
Checkpointing does not seem to work with Markov-modulated models

#1072 GuyBaele opened 5 years ago
1
SubTreeLeap ignores distanceKernel argument

#1071 maxbiostat closed 5 years ago
0
Threads and memory management in BEAST / BEAGLE

#1070 CelineReisser closed 1 year ago
1
java.lang.NullPointerException

#1069 ulfboge closed 5 years ago
3
problem assigning date uncertainty to taxa in BEAUti

#1068 GuyBaele closed 4 months ago
1
incorrect rescaling of starting tree with negative branch lengths

#1067 plemey closed 4 months ago
2
Importing partition information in BEAUti 1.10.x

#1066 GuyBaele opened 5 years ago
1
Data likelihood evaluates to NaN when trait is completely missing

#1065 gabehassler closed 7 months ago
1
Normal logGradient

#1064 maxbiostat closed 5 years ago
1
Using TempEst with partially missing dates

#1063 julibeg closed 7 months ago
1
XML contains HPM that are not shown in the prior window

#1062 Serebix opened 5 years ago
0
Can't save Beauti files with HPM in it and unable to restore settings through XML files.

#1061 Serebix closed 4 months ago
1
"Unable to parse number correctly" warning prevent prior linking into HPM

#1060 Serebix closed 4 months ago
0
Migrate Ancestral States and Markov Jumps to TreeDataLikelihood

#1059 rambaut opened 5 years ago
1

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