beast-dev beast-mcmc issues

beast-dev / beast-mcmc

Bayesian Evolutionary Analysis Sampling Trees

http://beast.community

GNU Lesser General Public License v2.1

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issues

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Make speed timing a rolling average

#1058 rambaut closed 7 months ago
1
Implement Muse & Gaut codon model selection in BEAUti.

#1057 rambaut opened 5 years ago
0
Muse and Gaut (1994)

#1056 migrau closed 5 years ago
3
Out of Memory

#1055 kchaconv2 closed 5 years ago
1
Missing states in log file

#1054 rhagenson closed 5 years ago
9
Fixed SubtreeLeapOperator with taxa

#1053 4ment closed 7 months ago
0
BEAUti error with amino acids and pInv models

#1052 rambaut closed 4 months ago
1
BEAUti doesn't generate correct relative rates for amino acid partitions.

#1051 rambaut closed 4 months ago
3
beast error : Failed to load parser: dr.inferencexml.trace.GeneralizedHarmonicMeanAnalysisParser

#1050 NOVICEINBEAST closed 5 years ago
0
Implementing Gumbel type II prior for Skygrid precision; see https://…

#1049 maxbiostat closed 5 years ago
1
BEAuti creates empty AVMVN block

#1048 maxbiostat closed 5 years ago
3
Power adaptation

#1047 maxbiostat closed 5 years ago
2
File "beast-beagle.jar" appears to be missing from 1.10.4

#1046 petersmp closed 5 years ago
2
BEAUti doesn't allow shared clock model across partitions without overlapping taxa.

#1045 evogytis closed 5 years ago
1
Allow multiple state files as input and ouput to CheckPointUpdaterApp

#1044 4ment closed 5 years ago
0
fixing stuff to use the newest version

#1043 maxbiostat closed 6 years ago
0
adding Cauchy kernel to STL

#1042 maxbiostat closed 6 years ago
0
TipLeapOperator and its parser

#1041 4ment closed 6 years ago
1
STL operator doesn't produce same sequence with the same seed.

#1040 rambaut closed 6 years ago
2
Make thread control behaviour more intuitive

#1039 rambaut opened 6 years ago
1
logcombiner -burnin issue

#1038 Chjulian closed 6 years ago
0
Likelihood computation performance reduced with BEAGLE 3 on CPU

#1037 rambaut closed 6 years ago
1
Truncated normals not working as priors

#1036 rambaut closed 6 years ago
1
TempEst Java error on Mojave

#1035 kga1978 closed 1 year ago
1
Code signing for Windows exe

#1034 rambaut opened 6 years ago
0
BEAUti-generated GLM analyses no longer run

#1033 GuyBaele closed 6 years ago
4
BEAUti prior dialog box won't open

#1032 maxbiostat closed 4 months ago
2
Burn-in for GSS

#1031 maxbiostat closed 6 years ago
3
Skygrid gets stuck

#1030 maxbiostat closed 7 months ago
20
BEAST v1.10.1.exe is not a valid Win32 application

#1029 Jessie20182019 closed 6 years ago
1
Tooltips for LogCombiner and TreeAnnotator

#1028 rambaut opened 6 years ago
0
Issue with renumbering log files

#1027 rambaut opened 6 years ago
0
Check LogCombiner & TreeAnnotator use longs for state numbers

#1026 rambaut closed 6 years ago
1
BEASTv1.10.1 limit the predictors quantities

#1025 xiayh17 closed 6 years ago
4
Unable to install BEAST.v1.10.1 / no mountable file systems Error

#1024 bnitm closed 1 year ago
2
Error creating 'nu' parameter with Amino Acid model?

#1023 rambaut closed 4 months ago
5
log both allNus and allMus?

#1022 GuyBaele closed 6 years ago
5
allMus with unequal weights clashes with Dirichlet prior

#1021 GuyBaele closed 7 months ago
6
GSS has a problem with novel GTR parameterization

#1020 GuyBaele closed 6 years ago
1
Running beast with MC3 fails

#1019 EnzoAndree opened 6 years ago
1
Merge in Mike's sampler after removing unused code

#1018 msuchard closed 6 years ago
0
Merge in Mike's work

#1017 msuchard closed 6 years ago
0
Default uncorrelated clock model in BEAUti uses continuous representation

#1016 msuchard closed 7 months ago
2
logChoose is more numerically stable

#1015 maxbiostat closed 6 years ago
0
Unable to open BEAUti setting file with some tree priors

#1014 rambaut closed 6 years ago
0
One xml file runs from BEAST gui, but cannot be parsed on the command-line

#1013 moskalenko closed 7 months ago
1
Need way of specifying tip local clocks in BEAUti

#1012 rambaut opened 6 years ago
0
Remove outdated build step

#1011 jonchang closed 6 years ago
2
BEAUti puts tmrca priors on the <taxa> ID rather than on the tmrcaStatistic ID

#1010 GuyBaele closed 6 years ago
2
ScaleOperator doesn't work on strictly negative parameters

#1009 mdhall272 closed 6 years ago
5

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