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If the input data to annotate are from multiple expermients/conditions/etc does that affect the results
i.e. would you ideally annotate before combining, or no effect?
Also I had to `pip install r…
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I need to detect the source of paired reads for a batch of sequencing data, and each time I need to reload the database into memory, the loading speed is very slow. Can the database be loaded into mem…
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Hello!
I have downloaded vsnp3 on my MacOS (M2 Chip) using conda and I am currently trying to [Run test with AF2122 (Mycobacterium bovis)](https://github.com/USDA-VS/vSNP3/tree/main?tab=readme-ov-…
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Per the last Architecture call, the next templated query will be: `Chemical-[affects; up or down]-gene`.
We need to:
1. See if there exists sufficient training data to use a model similar to xDT…
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**My command**
```
date && time deca-submit cnv -L Exome_Target_hg19.bed -o $(pwd) -I S23.bam
```
**Error message**
```
Sat Feb 29 12:29:55 IST 2020
Using SPARK_SUBMIT=/home/bioinfo/spark…
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* [x] This is a bug report
* [ ] This is a feature request
* [ ] I searched existing issues before opening this one
### Behavior
I'm building vm image for openstack, I wanna pull some do…
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When pushing big layers timeout of the authentication happens. eg layers over 1GB insize
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I try to do this tutorial using conda enviroment.
I have this error:
```
n.pre_blast_filter -E 0.001 --genome_lib_dir /home/centos/illumina/TEST_FUSION/STAR-Fusion-Tutorial/ctat_genome_lib_build_…
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https://docs.google.com/document/d/1nJaY-h-knpGmmj5u54DzmtDiRZCPq4PsCwiRTyG3eeA/edit#heading=h.mda8iyj4pxc3
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Example: "Dovitinib" and "Celastrol" do not exist in [RxNorm](https://mor.nlm.nih.gov/RxNav/).
Investigate:
- Whether drug exists in other drug databases. For example "Dovitinib" exists in other …