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I may have asked this before and forgotton, but can calcium be imported into cytosol in any way other than transmembrane. I noticed that our annotations to "calcium ion transport into cytosol" and ch…
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When I run on a 4 processor machine (16 cores each) all cores are utilized at approximately 60%. However the frame rate (~3.5FPS with no graphics (`-no_g` flag)) is indicative of only one processor be…
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`DEFAUTL_FORMAT_STRING` formats datetime with precision of minutes.
https://github.com/mitsuhiko/logbook/blob/master/logbook/handlers.py#L34
Personally I am used to see precision of seconds and very…
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Reported by **till** and assigned to **maeder**
Migrated from http://trac.informatik.uni-bremen.de:8080/hets/ticket/1247
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Ontohub uses "hets -s" for quickly analysing lots of (possibly large) fi…
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Because of the API breaking changes planned for 0.4, most IOs will have to be modified. Since the HDF5 IO supports all Neo features and defines its own format, the changes there will probably be the m…
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It just occurred to me that it should be possible to add a general bidirectional hd5 io without writing too many lines. We already have the pandas io and pandas supports pytables/hdf5. I was always th…
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Jeff,
Searching VIVO for “electrical activity in the heart” produces about four pages of search results. First page screen shot attached as figure 1. This isn’t a MeSH term, so the results are unev…
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The docs don't mention this anywhere.
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Sibernetic saves simulations to disk if the `-l_to` flag is used. However if the `g++` compiler is used (without debug flags) it segfaults. It works with `gdb` for some reason.
_UPDATE_ So it's a lit…
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Simulation results can be saved with the `-l_to` flag (though this is buggy, see #155). However the files can be quite huge (e.g 75GB for a 1s simulation). Currently this whole file needs to be loaded…