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[ Related to openjournals/joss-reviews/issues/2440 ]
Are the masks in the left of the example in the tutorial two cells? There seems to be two nuclei, but are they two cells? Maybe a different less…
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Hi, I'm currently using this package for segmentation of multichannel confocal microscopy cell image. The package works well for most of the case, except when image size is (1728, 1728). I have tried …
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Hi
I was training a Stardist3D model. For now I just downloaded the datasets from the link https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki and run all the notebook. It already performed quite w…
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Hi,
I can't find a way to create the stat files for the label-eroding & smoothing step on my data. I'm looking for the files created in the basic protocol (I don't know which step but I only did ev…
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What about time series?
What would we need to change to support it.
I will look into setting up an example dataset.
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very useful to get features from segmentation labels in pandas dataframe
```python
import pandas as pd
info_table = pd.DataFrame(
measure.regionprops_table(
interior_labels,
…
giovp updated
3 years ago
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Hi,
I was wondering if we could train our own data through hovernet with our defined instance classes and steps to get there
1. I have seen an older issue that mentioned that we would have to go…
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Benefit: knowledge of cell count in each spot is very important for simulation for deconvolution, and for analysing data in general. On top of cell segmentations could calculate shape / size statistic…
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Hi guys!
**Nuclei version**
2.2.0
**Nuclei template version**
{"templates-directory":"/root/nuclei-templates","current-version":"7.3.7","last-checked":"2021-01-12T08:34:35.595424475Z"}
…
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**Describe the bug**
We're encountering a SIGSEGV crash whilst attempting to scan a small group of hosts.
**Command line**
```
subfinder -d "$1" | httpx -csp-probe -threads 1500 -ports 80,88,443…