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This code partially works, as I have 42 input sequences. My goal is to return the taxonomy associated with each sequence. However, I only received 30 sequences, leaving 12 missing.
Here is my code:…
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Error in load_gbk.py script when trying to load the genome LC789759 [Klebsiella pneumoniae](https://www.ncbi.nlm.nih.gov/nuccore/LC789759.1/).
```python
Traceback (most recent call last):
File "/…
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```
In
http://code.google.com/p/psimi/source/browse/trunk/psimitab-parser/src/?r=369#sr
c%2Ftest%2Fresources%2Fmitab-samples, the first line in each sample file should
probably begin with '#'.
```
…
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As reported to the help email:
> ---------- Forwarded message ---------
> Date: Wed, Jul 31, 2024 at 10:44 PM
> Subject: Antisense RNAs
> [snip]
> I did, however, come across something that see…
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Python2.7 is not support for the biopython.
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I wanted to build a database with custom k-size values containing all genomes under [taxid Shewanella](https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=22&lvl=3&lin=f&keep=1&srchm…
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Hello
I have a problem with download and summarize NCBI Dump files as below:
> (base) amugae1210@pc101:~/tools/PhyloPlus$ ./phyloplus.sh -m download
cd /home1/amugae1210/tools/PhyloPlus
mkdir …
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Hi David,
Thanks for posting this solution up, I was just wondering if you have any pointers on how to use the Taxonomy refinement filter?
I'm guessing you use with the owsmetadatatagsallinfo pr…
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I'm interested in mapping metagenome reads to genome bins I've previously assembled and are not available in public databases. The documentation regarding the creation of a [custom databases](http://s…
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Database building started at 2023-12-07 17:48:50.178062.
Reading NCBI taxonomy database... done.
Total number of TaxIDs: 2545202.
Reading RefSeq assembly summary... done.
Total number of genom…