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qiyunlab
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HGTector
HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
BSD 3-Clause "New" or "Revised" License
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wide self and close groups assigned/ WARNING: Cannot cluster close group using KDE/ no close.kde.png out
#140
meisiy
opened
11 hours ago
0
hgtector: command not found
#139
kangluyao
opened
5 days ago
0
Database Download Issuse
#138
Rounak-Kumawat
opened
1 month ago
1
taxid
#137
duxi190914
opened
3 months ago
9
HGTECTOR MODIFIED SEARCH COMMAND RESTRICTING THE DIAMOND MEMORY ALLOCATION TO 6GB
#136
mainakbioinfo
opened
9 months ago
0
Can HGTector2 detect HGTs from the 'Close' group to the 'self' group?
#135
maruiqi0710
opened
11 months ago
1
An error occurred downloading the database
#134
taotaoyuan
opened
11 months ago
3
Not any hits in HGTector to detect HGT in plants
#133
taotaoyuan
opened
11 months ago
0
Can the blast step be completed locally and then analyzed using HGTector?
#132
CallMeEleven
opened
11 months ago
0
The meaning and impact of genes with 'TaxID' of 0 in the HGTector2 prediction result
#131
chenhuag
opened
1 year ago
4
hgtdb_20170630.tar.xz
#130
YingyingZ9
opened
1 year ago
1
encountered an error while running the search option on blast
#129
zhuxihui
opened
1 year ago
0
using MacOS-compatible CPU count
#128
qiyunzhu
closed
1 year ago
0
Fails at diamond blast, type error: expected string
#127
kaw97
opened
1 year ago
5
Problem in downloading database
#126
Subhajeet1997
opened
1 year ago
12
Updated NCBI assembly summary format
#125
qiyunzhu
closed
1 year ago
0
Fixed minor issues
#124
qiyunzhu
closed
1 year ago
0
about database build!
#123
jiyanhan
closed
1 year ago
3
overcommit + relax blast threads
#122
EricDeveaud
closed
1 year ago
2
Remote search timeout error
#121
molamber
closed
1 year ago
2
Improved remote search
#120
qiyunzhu
closed
1 year ago
0
Fixed diamond makdb tmpdir bug
#119
qiyunzhu
closed
1 year ago
0
Fixed pandas str.split kwarg issue
#118
qiyunzhu
closed
1 year ago
0
about datase build
#117
manik-123
closed
1 year ago
8
making plant database with error
#116
zouminghong
closed
1 year ago
1
Meet error in making database
#115
Xinpeng021001
closed
1 year ago
1
ValueError: diamond failed with error code 1.
#114
taotaoyuan
closed
1 year ago
22
blast database
#113
lanlan0210
closed
1 year ago
4
run too long
#112
zpinocchio
closed
1 year ago
3
Combining databases to predict is much less than separately
#111
1835033964
opened
1 year ago
0
Updated database release to 2023-01-02
#110
qiyunzhu
closed
1 year ago
0
HGT events in plants
#109
Luanxins
opened
1 year ago
3
ValueError: Invalid bandwidth：0.3.
#108
likainan001
opened
2 years ago
0
ImportError: dlopen: cannot load any more object with static TLS
#107
jpca21
opened
2 years ago
0
database --default parameters
#106
Rundon-svg
opened
2 years ago
0
Why not add the parameter for threads used for GridSearchCV?
#105
Tonny-zhou
opened
2 years ago
1
Tweaked sampling option
#104
qiyunzhu
closed
2 years ago
0
Fixed two bugs in the database workflow
#103
qiyunzhu
closed
2 years ago
0
plant genomes making database error
#102
cfz1998
closed
2 years ago
9
Error while building database with custom GenBank IDs list
#101
IrechaC
opened
2 years ago
1
HGT detetction in fish
#100
posavi28
opened
2 years ago
1
Build Reference Database Issue: EOFError
#99
KarimAI7
closed
2 years ago
1
Cannot download data from NCBI refseq
#98
YimingLiu000
closed
1 year ago
3
Added support for newer diamond makedb
#97
qiyunzhu
closed
2 years ago
0
Fixed a bug when some faa files cannot be retrieved
#96
qiyunzhu
closed
2 years ago
0
DIAMOND failed with error code 139
#95
malleryc
closed
2 years ago
9
Database error
#94
TaoCheng98
closed
2 years ago
5
Fixed db failed bug
#93
qiyunzhu
closed
2 years ago
0
Database creation died with pandas error
#92
jeankeller
closed
2 years ago
5
Problempre-compiled database from dropbox
#91
Tonny-zhou
closed
2 years ago
2
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