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I found that `Math.combination` gives odd results when the first argument is large, but realized that this is probably expected from the conversion to OCaml ints. My problem was solved by seeing tha…
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I'm simulating the mating between male haplotypes (SLFs, F) and female haplotypes (S-RNases, R) under SI, where each SLF can mate with a few S-RNases that genotypically differ from itself, but not all…
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Problem: Genomic data for the same taxon ID have different annotation and assembly versions.
Solution: Add annotation and assembly versions to the Organism object in the core InterMine data model.…
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I'm not sure if this is a feature request or just a question.
I am looking at the local genetic ancestry of admixed samples. That is - what is the ancestral origin of each genomic segment in eac…
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Here are some ideas. Bad ideas allowed, since maybe they will lead to good ones.
How to speed up forwards-time simulations by recording absolutely everything
Tree sequences and forwards-time si…
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# Pitch
## Summary
DNA forensics first made its way into the US courts in 1986 and, up until now, has helped exonerate almost 1/4 of the total innocent individuals (2060 in total) listed in the…
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**I am currently running**
- SpongeForge version: 3475
- Forge version: 2760
- Java version: 1.8 update 181
- Operating System: Windows Server
- Plugins/Mods: Minecraft, Minecraft Coder Pac…
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This is a pretty general problem for all linear models, so someone's got to have thought about this.
Be good to find current guidance...
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Hi,
I'm struggling to get my numeric data to read in MVP.
I prepared the numeric format based on the instructions at https://github.com/XiaoleiLiuBio/MVP
It looks like this (Just a portion …
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Hi All,
I am using RASQUAL on RNA-Seq data. Its been doing an amazing job so far.
I have couple of questions:
I saw in a paper that they split the genes in to "Genes with fSNPs" i.e likely t…