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When the mapped mate of a singly mapping pair is marked as duplicate, its unmapped mate is not marked as duplicate. This is expected behavior as MarkDuplicates ignores unmapped reads from consideratio…
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The pipeline of svg picture is so complex.
Do you have any simple shell code description?
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Presuming there is sufficient DNA...
We will be sending these samples out for MBD-BS-seq.
sr320 updated
5 years ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/shokoohi/DMCFB
Confirm the following by editing e…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/CompEpigen/methrix
Confirm the following by editi…
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There are a bunch of tools that have docker requirements slapped in like this:
```
requirements:
- class: DockerRequirement …
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* **Name of tool:**
* HiC-Pro
* **Tool description:**
* An optimized and flexible pipeline for Hi-C data processing
* **Tool homepage:**
* https://github.com/nservant/HiC-Pro
* **Com…
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Hello,
I have normalized beta and M values for EPIC array, and would like to run calculatediffmeth() with covariates. I am unable to figure out how to create a methobj for the analysis. I have phenot…
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I keep getting this when running the pipeline locally:
Error in writing fastq file /dev/stdout
This is SamtoFastq where FASTQ=/dev/stdout. I have also tried FASTQ=/proc/self/fd/1
Can someone P…
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hello,
while vaditating bam file i am getting this error .How to solve this?
java -jar picard.jar ValidateSamFile \
> I=aln-A93fixed_vs_R498.bam \
> MODE=SUMMARY
INFO 2019-01-30 15:04:59 Valid…