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when I use "pip" for installing cellphonedb in Win7 or Win10, I just encountered a problem referring to "rpy2" package.
WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, sta…
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Hi,
Thanks for this useful tool.
I've been used the online server for quite a long period but just transited to use python package since the server constantly feedback with 500 internal server e…
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Hi,
When running `cellphonedb database generate --result-path`, `result-path` is appended to the working directory, even if an absolute path is given.
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Hi CellphoneDB team,
I want to infer cell-cell communication with my owe database. I try to use the code below.
cellphonedb database generate --user-interactions your_custom_interaction_file.cs…
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Hi !
I am a bit confused about the best way to use the scib pacakge. I am only interested in running the quality metrics. From the issues page i understood to run the quality metrics i only need the …
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When I run the cellphonedb program locally, the id_cp_interaction term CPI-SS027556893 is present twice in the output results.
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Hi!
Is there a way to tell cellphoneDB a specific way to order the heatmap rows and columns? I'm trying to compare two datasets and it always generates heatmaps that have some hierarchical clusteri…
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Hi all,
I ran the cellphoneDB analysis with the default parameters and there were lot of interactions with p-value equal to 0. My question is how do I further prioritize this list. Should I do mo…
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Hi,
I failed to run both plots in Linux with the following error:
RuntimeError: found a situation in which we try to build a type recursively. This is known to occur e.g. in ``struct s { void(*…
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Hi,
I would like to know it it is possible to use the pvalues files to make a Circos plot showing all significant interactions between different clusters with each interaction line being a ligand-rec…