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On my smokers the test suite started to fail:
```
Can't use an undefined value as a HASH reference at t/01_import.t line 29.
# Tests were run but no plan was declared and done_testing() was not see…
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All Cdc73/Paf1 complex subunits are annotated to histone modification:
SPBC13E7.08c IPR007149
SPBC17G9.02c IPR007852
SPAC664.03 IPR007133
SPBC651.09c IPR031102
SPAC27D7.14c IPR031101
Appe…
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**List of how to refer to specific data set types**
Human readable | file names |
------------ | ------------- |
Variation | Variation
Poly(A) sites | PolyA
Replication profiling | Replica…
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- Containerize SRA toolkit
- Spot check several SRA datasets for packaging formats (get access?)
- Modify pipeline to download SRA as input
- Start Azure boxes
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Basement membrane (GO:0005604) should be is_a proteinaceous ECM (is currently part_of) as it’s consistently described as a type of ECM (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3039528/)
See #1…
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Jo McEntire:
It would be great to get some links from Europe PMC to PomBase as we have done for Worm and FlyBase. It is very straightforward:
http://europepmc.org/LabsLink
I have cc’ed our Author s…
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This is the complex that brings the protein to the channel (translocon),
So I think this one should be annotated as a
MF carrier rather than a
https://www.ebi.ac.uk/QuickGO/term/GO:0140104
…
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this is separate from Entrez and PMC US
p.s., would also do Canada PMC, but they look a bit haggard
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Is there a way to execute gatling simulations and fail if some address is unreachable? Or if the app performance is not acceptable?
Thanks,
PH
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I'm assessing fission yeast unknown proteins.
We have an ortholog of NUCB1
http://www.uniprot.org/uniprot/Q02818
NUCB1 has quite a lot of annotation, but I can't really find anything experimenta…