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Using R 3.2.2 in Windows 8.1, I'm trying to import a qiime otu table file, using this code:
biom_otu_tax
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The workshop will be on Tuesday from 4-6p in CS150/151.
jjfiv updated
8 years ago
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Hi,
I would like to request your help in creating a phyloseq object for further analysis. This is the first time am getting to use phyloseq and am eager to see some plots and perform some analysis.
My…
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Hi,
I am attempting to run dada2 on a single sample fastq file (1043802 seqs, length ~300). I'm running this on a single node machine with 32 cores and 256GB of ram.
At this point the job has been …
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After class definition for dada output is defined, can define a hand-off method for phyloseq. Will need to need to figure out what part needs to be defined in dadac, and what part needs to be defined …
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Hello,
Can you bring in a site by species matrix as an 'otu table' and environmental data as sample meta-data and merge them into a phyloseq object?
For instance, import the BCI data and BCI.env and…
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We have been calling a lot of things "metadata" throughout the development of anvi'o, when we should not have.
I already was upset about this situation (although failed, I attempted to fix it before …
meren updated
9 years ago
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The ShortRead package is importing more than necessary, which adds some time and excess messages during package loading.
Is it possible to import just part of a package? Joey?
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When I ran cron interactively from /var/www/apps/rbsc on libphp-prod a large number of feeds xpath errors were generated. I'm recording them in case this helps shed some light on feeds update problems…
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Thursday we installed version 1.5 in preparation for the competition today (Saturday, 2-06). We didn't test it because all we did was pull the update to our github repo and deploy it - what could go …