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I'm trying to use ISOWN for somatic/germline prediction.
After installation, when I test it, I faced this error message. (I erased absolute address of files)
> $cwd/qpipeline tabix -m 2020 -d 00…
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Dear madam/sir,
I used ISOWN to identify somatic mutations and get the following error message when dong the annotation
`bin/qpipeline tabix -m 2020 -d bin/../external_databases/00-ALL.modified.…
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When I annotate a vcf with annovar software, the results are like below:
```
NM_001313896.1:c.344_349dup
```
or
```
MEGF6:NM_001409:exon8:c.C938T:p.A313V
```
Is there a way to convert `NM_…
xiucz updated
6 years ago
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The InterVar uses default output of Annovar for selected frequency databases, which are **ExAC**, **ESP6500** and **1000** Genomes. In 2007, Annovar [announced that](http://annovar.openbioinformatics.…
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Hello! I am trying to run Canopy on a VCF containing daya from several tumor samples. However, when I use the command readVCFforCanopy(), I get the following error:
Error in readVCFforCanopy(myVCF)…
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Hi
I want to use DriverPower for my WGS data on gastric cancer. I have read the quick start guide but I think the data format is too difficult for me, possibly also for other users to produce. Most o…
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Hi Developer!
I test the latest annovar, and get a error.
log record as below:
**$ table_annovar.pl $Sample.combined.vcf $Anno_db --vcfinput -buildver hg38 -out $Sample --checkfile --otherinfo …
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Whenever I run hgvs for several hours, there will always be a connection failure error, I'm not sure whether it is caused by the frequency of use.
The error message is as follows:
File "/DATA/wang…
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Dear Dr.Wang
I use the _**Breakdancer**_ to identify SVs and the output format like this
#Chr1 Pos1 Orientation1 Chr2 Pos2 Orientation2 Type Size Score num_Reads num_…
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```
$vtools annotate_variation.pl ann.in humandb/
usage: vtools [-h] [--version]
{init,import,phenotype,show,liftover,use,update,select,exclude,compare,output,export,remove,associate…