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### Description of bug
Dear developer
I am trying to create hybrid assembly using metaSPAdes module. This is not the first time that we are doing this, however we never experienced any problems. …
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I have been trying to use [iRep](https://github.com/christophertbrown/iRep) which seems to use the function`ctbBio.mapped.get_reads()` and `ctbBio.mapped.reads_from_mapping()` from this package to par…
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Hello! I am fortunate to have read your article. But I have some questions. I downloaded some human metagenomic data from the internet, intending to use it for unified analysis. However, there is clea…
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**Submitting author:** @bluegenes (N. Tessa Pierce-Ward)
**Repository:** https://github.com/sourmash-bio/sourmash
**Branch with paper.md** (empty if default branch):
**Version:** v4.8.8
**Editor:** @…
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Hello,
I am trying Racon for first time. I am getting this error when I try to polish my data. I have tried with the files provided for the test and I get same error.
[racon::Polisher::initializ…
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Hi! I was wondering how CARD determines whether or not an ARG is of clinical relevance? Is there a separate database to be used if one is only interested in clinically relevant ARGs? I was using Nanop…
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I'm planning on using your wonderful Salmon tool v0.12.0 for generating TPM counts with a view to quantifying relative abundance of certain bacterial antibiotic resistance genes in my shotgun (human g…
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Hi @Kinggerm, I am trying to assemble the mitochondrial genome using get organelle tool but I am keep getting this error of No valid assembly graph found. I looked in the issues section and implemente…
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The application works great and we try to incorporate it in Jupyter notebooks however there are some small things that we would like to see added if possible.
1. The search function when searching …
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Cross reference to #672. Create ``ecosystem`` terms to represent the GOLD/EBI-mgnify ``root > Environmental > Air`` classes:
```
root > Environmental > Air
root > Environmental > Air > Indoor Air…