-
...is not being found, or at least a message is being generated to that effect:
```
Using base Sample because of failure in attempt to import pipeline module '/home/vpr9v/code/dnameth_pipelines/src/…
-
I wrote a script to run `bismark` in Mox: https://github.com/fish546-2018/yaamini-virginica/blob/master/scripts/2018-10-12-Bismark-Revised-Parameters.sh
I have a few questions/things I need clarifi…
-
Here are the bioanalyzer results from the gigas broodstock DNA test extractions:
![unnamed-1](https://user-images.githubusercontent.com/22335838/46119829-d0290c00-c1c1-11e8-93f1-d4ce76f78d5c.png)
…
-
I am using nf-core-methylseq-1.2, with conda environment installed from `environment.yml`, including java 8 in that environment. Conda Source environment is activated on local HPC.
1. Error in cal…
-
Hi,
I have a test script here for analyzing two fastq files, which includes three parts:
1. Running Bismark on untrimmed sequences
2. Trim sequences by TrimGalore
3. Running Bismark on trimmed seq…
-
Hi Felix,
I'm doing something a bit different from usual, mainly because I don't have the original fastq files from an experiment, and only the bam files already aligned by bismark on a hg37 refere…
-
Hi,
I am trying to set up a dmrseq analysis with bisulfite sequencing data from several twin pairs discordant for memory function. I got a bit confused how the adjustCovariate and matchCovariate pa…
-
Could you write a brief methods section for constructing both MBDbs and msp-bs library from DNA to sequencer (ie kit names)?
And estimate cost per/sample
sr320 updated
6 years ago
-
Dear Steven,
I was recently looking at for potential contamination of a bisulfite sequencing sample with FastQ Screen (using `--bisulfite`), and got the following result:
![screen result](https://…
-
Hi,
I'm trying to use multiple cores when running dmrseq but the number of cores I'm using doesn't influence the running time. My test data set contains about 400 contigs and the running time is ab…