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FelixKrueger
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TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
GNU General Public License v3.0
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Trim just one read in paired-end data by TrimGalore
#193
iranianuser
closed
2 weeks ago
4
question about trimming
#192
hidvegin
closed
3 weeks ago
4
Queries regarding TrimGalore
#191
unikill066
closed
4 weeks ago
3
Trim Galore frozen at adapter trimming step
#190
faye-romero
opened
2 months ago
3
Does TrimGalore do soft clipping by default?
#189
tarunaaggarwal
closed
2 months ago
6
ask for help in removing the first 10 nt random barcode in the 5’ end
#188
Shuixin-Li
closed
3 months ago
1
Trimgalore seems to detect only a very low % of reads in the files that had adapters to trim (<40% of the reads)
#187
dthirupp
closed
4 months ago
4
Adapter Trimming on PE reads have different number of reads output
#186
bshim181
opened
4 months ago
1
Trim galore config for pacbio data
#185
YutongLei2020
closed
4 months ago
2
Add new option `--cutadapt_args` to pass on additional params
#184
FelixKrueger
opened
5 months ago
0
Change processing strategy for `--clock` option
#183
FelixKrueger
closed
5 months ago
1
md5sum
#182
zhangqc723
closed
5 months ago
1
TrimGalore calls pigz when not required
#181
kaushikr3
closed
7 months ago
2
High PolyA content in R2 reads after trimming.
#180
AmrSaadeldin
opened
8 months ago
3
problems installing via conda/mamba
#179
mawa86
opened
8 months ago
1
Trim galore gets stuck on quality and adapter trimming
#178
aman-akash
opened
9 months ago
3
Trim_galore directional vs. non-directional mode
#177
shaghayeghsoudi
closed
9 months ago
4
Please provide an even number of input files for paired-end FastQ trimming! Aborting ..
#176
shaghayeghsoudi
closed
9 months ago
2
TrimGalore Citation
#175
Leo-ccc
closed
10 months ago
1
Trimming for xGen™ Methyl-Seq DNA Library Prep Kit
#174
abearab
closed
10 months ago
4
Validation fails when FASTA files used as input
#173
vkkodali
closed
10 months ago
4
Conda installation of trim_galore uses really old version of cutadapt
#172
vkkodali
closed
10 months ago
2
TrimGalore
#171
eneubauer29
closed
10 months ago
1
RRBS data trimming-CGA problem
#170
MilosCRF
closed
11 months ago
5
Trim-galore not compatible with latest python inside docker container.
#169
jorgeamaya
closed
11 months ago
2
Trim-galore through Bioconda requires workaround for M1 Macs.
#168
trev-f
closed
1 year ago
1
merge in changes from master
#167
FelixKrueger
closed
1 year ago
0
Add trimmed sequences to fastq header?
#166
js72587
closed
1 year ago
8
Is using an automatically recognized 13bp adapter sufficient?
#165
user-tq
closed
1 year ago
2
trimming multiple adapters from both reads
#164
mjbug
closed
1 year ago
9
--paired end specifications
#163
mjbug
closed
1 year ago
2
valX files vs trimmed files? diff output same code?
#162
desmodus1984
opened
1 year ago
4
files corrupted after using clock command
#161
AnastasijaVasilevska
closed
1 year ago
3
trimmed and val
#160
DWY1a
closed
5 months ago
1
Question about default quality filtering
#159
aepstein96
closed
1 year ago
1
UnicodeEncodeError: 'ascii' codec can't encode character '\xb5' in position 2492: ordinal not in range(128)
#158
anoopsanal
closed
1 year ago
3
Trimming .gz files
#157
samhimes92
closed
1 year ago
5
Fixed essential bug for decompression default path
#156
FelixKrueger
closed
1 year ago
0
Use of uninitialized value $decompression_path in concatenation (.) or string at /home/sli1/miniconda3/envs/atac3/bin/trim_galore line 2671.
#155
shl129
closed
1 year ago
4
Update master
#154
FelixKrueger
closed
1 year ago
0
update dev
#153
FelixKrueger
closed
1 year ago
0
declaration for "$maxn_fraction"
#152
manogenome
closed
1 year ago
2
get Master up to speed
#151
FelixKrueger
closed
1 year ago
0
Bringing dev up to current state
#150
FelixKrueger
closed
1 year ago
0
Optionally use igzip for decompression of gzipped files.
#149
ghuls
closed
1 year ago
1
Using TrimGalore for different rounds of adaptor cuttings
#148
carmencita
opened
1 year ago
4
trimgalore and cutadapt in two steps?
#147
marwa38
opened
1 year ago
6
Can trimgalore be used to clean up mate pair libraries?
#146
gunjanpandey
opened
1 year ago
3
Update Ovation RRBS kit info
#145
michael-weinstein
closed
1 year ago
0
Fixes CPU warning bounds
#144
sclamons
closed
1 year ago
0
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