issues
search
FelixKrueger
/
TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
GNU General Public License v3.0
459
stars
149
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Fixes CPU warning bounds
#144
sclamons
closed
1 year ago
0
(new) problem with output having reads that don't have a mate in R1 and R2 files.
#143
bmillerlab
closed
6 months ago
3
Can anyone explain Why in default mode -- paired --retain_unpaired only read2 read are retain and not read1
#142
veeramv
closed
1 year ago
5
cutadapt: error: unrecognized arguments: -f P2_A01_M_0001.fastq Cutadapt terminated with exit signal: '512'.
#141
sevmurdock
closed
1 year ago
4
Segmentation fault when disk space is low
#140
pinin4fjords
closed
1 year ago
3
Run TrimGalore on a FASTA input
#139
vkkodali
closed
1 year ago
1
equivalent of `--discard-untrimmed` parameter in `trim_galore`
#138
bounlu
closed
2 years ago
1
`--max_n` value as a fraction
#137
bounlu
closed
2 years ago
4
After trimming 10 bp at 5', the GC content at 3' changed oddly
#136
XiaoTW123
closed
2 years ago
3
TrimGalored sequence cannot be mapped with Bowtie2
#135
moqri
closed
1 year ago
2
Changelog doesn't mention 0.6.7
#134
HenrikBengtsson
closed
2 years ago
1
How is an error defined?
#133
CharlotteAnne
closed
2 years ago
2
Adapter trimming in RRBS
#132
franrodalg
opened
2 years ago
13
Trim-galore fails at quality check for some samples but not others
#131
bonzay36
closed
2 years ago
3
adapter+quality trimming followed by hard-trimming
#130
pmenzel
closed
2 years ago
5
No reads end with "A" after trimming
#129
hkaspersen
closed
2 years ago
2
cutadapt: error: unrecognized arguments: -f
#128
samsharr
closed
2 years ago
4
Does TrimGalore handle the Illumina T-overhang
#127
pcantalupo
closed
2 years ago
20
How to properly specify a basename?
#126
jolespin
closed
2 years ago
2
The --nextseq argument doesn't change the parameters of cutadapt
#125
josephhughes
closed
2 years ago
3
Cutadapt version error
#124
Jacob-Ferrier
closed
2 years ago
3
cutadapt cores option docs are misleading
#123
keiranmraine
closed
2 years ago
1
FastQC location as argument to trim_galore
#122
niekwit
closed
3 years ago
2
primerset?
#121
marwa38
closed
2 years ago
2
Adapter trimming of Illumina DNA PCR-Free prep sequences
#120
andrews-matt
closed
3 years ago
3
Incomplete trimming of Illumina adapters
#119
ag1805x
closed
3 years ago
3
SOLiD sequencing data processing
#118
dahun73
closed
3 years ago
2
cutadapt: error: [Errno 2] No such file or directory: 'file.fastq\xa0'
#117
Hannah1746
closed
3 years ago
2
Multicore support not enabled
#116
dahun73
closed
3 years ago
1
Adapter Content after using TrimGalore
#115
NicMAlexandre
closed
3 years ago
3
Update Trim_Galore_User_Guide.md
#114
eafyounian
closed
3 years ago
1
The report is ok but fastqc result shows trimming process hasn't been done
#113
xjs1996
closed
3 years ago
4
FastQC fails after trimming due to "No such file or directory..."
#112
kubu4
closed
3 years ago
2
Adapter sequence must contain DNA characters only (A,C,T,G or N)!
#111
titand98
closed
3 years ago
2
Error - adapter trimming
#110
bioramg
closed
2 years ago
12
Incompatibility error with latest python 3.9.0
#109
janstrauss1
closed
3 years ago
2
TrimGalore removes overrepresented sequences only from R2, R1 untouched.
#108
kvn95ss
closed
3 years ago
3
Question about auto detected adapter sequnces and trimming only 3' or 5' end
#107
dahun73
closed
3 years ago
2
input file
#106
YspCoder
closed
3 years ago
3
TrimGalore version 0.6.6 thinks Cutadapt version 2.11 is <1.0
#105
mariadelmarq
closed
3 years ago
6
issue for excessive number of cores
#104
dahun73
closed
3 years ago
3
Truseq Methyl capture epic library -specific options for trimming
#103
freedomq8
closed
3 years ago
6
specify output file for pipelines ?
#102
colindaven
closed
4 years ago
2
Multicore support issues
#101
dahun73
closed
4 years ago
3
How to enter the Adaptor sequence manually?
#100
Rui-Jing
closed
3 years ago
1
python 3.8 incompatibility on Conda?
#99
Blosberg
closed
4 years ago
2
Read length vary for sequence in PE fastq files
#98
priyatamapandey
closed
3 years ago
10
how to set the input files with absolute path
#97
WellJoea
closed
4 years ago
5
Stdout stderr blocking open3
#96
aswarren
closed
3 years ago
7
TrimGalore with 10X data
#95
golharam
closed
4 years ago
7
Previous
Next