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Hi,
When I calculate the fixed points of my single-cell datasets I have some attractor points that are outside of the regions of my data.
These fixed points have a strong effect on the dynamics …
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Hello,
I'm trying to run the WRAP step but ran into an issue on stage 1. Looks like two issues:
1) object dimsum_meta_new_report not found
2) Temp FASTQs not found
Here is my design file (I ha…
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Hi,
After many tries I don't manage to generate results with grch37 assembly while I don't have any trouble with grch38 which I used for a while,
After parsing input and I 'm getting the first warni…
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Thank you again for this awesome tool!
During in silico perturbation simulation, namely "3.2. calculate future gene expression after perturbation", are the predicted expression values for all gene…
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Note that my perspective on this is that of a Homebrew user on Apple Silicon, who supports other Homebrew users on Apple Silico. Until PyTables supplies binary wheels, some variation of `pip install t…
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**Submitting author:** @AHCChan (Angelo Chan)
**Repository:** https://github.com/AHCChan/Synthetic_In_Silico_Genome_Generator
**Branch with paper.md** (empty if default branch): Dependencies_Included
…
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https://mp.weixin.qq.com/s/EgHYBTXUUSjW3SUv_dd1kQ
ixxmu updated
11 months ago
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### Week 1 - Get to know the community
- [X] Join the communication channels
- [X] Open a GitHub issue (this one!)
- [x] Install the Ersilia Model Hub and test the simplest model
- [x] Write a motiva…
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Hi Emre,
First of all congratualtions for your great job, is really impressing. Now I'm contacting to you, because I read the paper "Network-based in silico drug efficacy screening" where you calcu…
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I am trying to run philosopher pipeline with version 5.0, but I keep getting an error. The data consist of 12 samples and 48 fractions for each sample (label free). I get this error when I try to lau…