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Note: this ticket is intended primarily to document the curation procedure for the new kboom-based mondo. The curation methodology is to look at all sub-module solutions in which the graph with the **…
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The concepts Microcephaly (HP:0000252) and Decreased head circumference (HP:0040195) have very similar strings between them. Do all the synonyms in Microcephaly refer specifically to the syndrome, an…
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I'm working on getting phenogrid on to ZFIN's disease term pages. I need to call the REST API to fetch HP ids for a DO id, and because we tend to serve traffic under https, I need the API call to happ…
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we want to bring in the genereviews data, like:
http://www.ncbi.nlm.nih.gov/books/NBK1262/
we may get access to this via word docs. there are some docx parsers available, and discussions are underwa…
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As you know, we have been trying to [re-introduce](https://github.com/ga4gh/schemas/pull/432) the g2p schemas back into the mainline of the ga4gh schema repository.
A change in policy is before any sc…
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Source:
https://github.com/monarch-initiative/human-disease-ontology/blob/master/src/experimental/README.md
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Is there a better primary term name that will indicate this is an abnormal phenotype?
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I searched Monarch for pemphigus and got zero results: http://monarchinitiative.org/disease/DOID:9182
I searched for Pemphigus Erythematosus and got 5 human phenotypes.
But I would expect that if …
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need to import the kegg pathways and gene members.
kegg maps its pathways to a uber-gene (kegg ortholog), to which we can link to a species-specific gene via their orthology maps.
here is the relevan…
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our ontology browsing up and down the subclass hierarchy is not very intuitive. I had an idea that maybe there was a way to reuse some functionality from AmiGO for this purpose?
or if nothing else, p…