-
Hello, bcbio developers and users!
Thanks for the great pipeline!
I've read in the history that it is now possible to use vcfanno in RNA-seq analysis.
When trying this:
```
details:
- algori…
-
Need to be able to pass extra parameters down to installation command. An example of this is Toil:
https://toil.readthedocs.io/en/latest/gettingStarted/install.html#extras
-
Expand workflow example to calculate wind speed using a function tree.
Example 1: JSON file could look like:
```
{
"notes": [
"def add(a, b): return a + b",
"math.pow(add(math.pow…
-
Dear All:
As you may know, BioContainers is implementing the Ga4Gh API. We have well organized tools and their corresponding containers. We would like to extend some of the definitions of the curren…
-
I'm running into trouble running bcbio_prepare_samples.py on BAM files, as it doesn't seem to create links to these in the output directory. I'm running a recent development version (1.2.0a).
Here…
-
**Disable all the other extensions except for LaTeX Workshop, and check that you still see this issue. [Required]**
You still see this issue?: Yes
**Describe the bug [Required]**
With this co…
-
# Description
If a script is implemented to take an output folder as an argument and write files into the output folder, the command line correctly records lineage, but the linage returned by the g…
ciyer updated
4 years ago
-
Deploy model-to-data configuration on UW site. Start from the configuration used for the EHR DREAM Challenge: Patient Mortality Prediction.
-
## Description
I was trying to do some work on the subscriber side of the pubsub information model but i wasn't able to invoke a few method calls, since the data i received wasn't usable.
I ho…
-
Hi Brad,
Would it be possible to expand the `template` function to start from a directory of vcf files?
I've got some bigger batches of gvcf's to process and it would be handy if I could create th…