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Hi--
I would like to add the term 'lethargus' as a related synonym for GO:0030431 sleep.
I'm annotating genes from the paper cited below that are required for inducing lethargus, which has now been …
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which infers taxId via fuzzy matching of organism name
``` r
query %
bg_constrain(taxId = taxId("Drosophila melanogaster"))
query %>%
bg_constrain(taxId = 7227)
```
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As part of the apoptosis project, we looked at the term GO:0006917 'induction of apoptosis'
(def: "A process that directly activates any of the steps required for cell death by apoptosis.").
This ter…
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In using the pipeline everything looks fine until I arrive at this step. While the VCF files look okay and have the correct reference length, when I run the VCF_to_Seq_diploid.pl script the resulting …
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This stems from a SF query about taxon restrictions on the vitelline membrane terms:
https://sourceforge.net/tracker/?func=detail&aid=3160726&group\_id=36855&atid=440764
Eggs in most organisms are su…
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Sorry if this isn't the right place to post but I am getting an error using the BioJava library when processing PDB files:
```
BUILD FAILED
java.lang.OutOfMemoryError: Requested array size exceeds V…
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We have had a bit of a struggle finding the correct terms to annotate the prophenoloxidases described in this paper: PMID:22120533 == Li et al., 2012, Dev. Comp. Immunol. 36(4): 648--656
Properties of…
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Fails for:
13: Arabidopsis thaliana genes (TAIR10 (2010-09-TAIR10))
13: UniProtKB/SwissProt ID(s)
66: Drosophila melanogaster genes (BDGP5)
17: UniProt/Swissprot Accession(s) [e.g. P08111]
95: Homo…
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```
2015-05-19 11:41:22 ERROR org.intermine.webservice.server.WebService - Service failed by internal error. Request parameters:
extension: 1bp
start: 0
token: 91x47du6cbub6e0bFfl2
query:
filena…
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I tried to use latest snapr versions (from github and from website) to build genome and transcriptome indexes for latest drosophila_melanogaster genomes. As fasta file I tried dmel-all-FBgn-r6.02.fas…