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```
nilearn/connectome/tests/test_connectivity_matrices.py:244:1: CFQ001 Function test_geometric_mean_properties has length 64 that exceeds max allowed length 50
nilearn/connectome/tests/test_connec…
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in stable_projects/brain_parcellation/Kong2019_MSHBM/step1_generate_profiles_and_ini_params
I am running the CBIG_MSHBM_generate_ini_params on my own dataset with 15 subjects, two runs per subject.…
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Hi @mattcieslak ,
I noticed you had included the parcellation from CIT168 in the construction of some atlases for QSIprep v 16
Does this include the subthalamic nucleus for brainnetome? It wasn'…
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Hi,
I had a special case of data for which I used only the dwi-only preprocessing from qsiprep and then wrote my own anat pipeline. I gave them as inputs to the reconstruction workflow.
I notice…
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Hello.
Before processing all the data using COMMIT2, I tried to compare several values to determine which regularization lambda and fiber shift to use.
However, even if the value of Lambda is ch…
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Hi,
I want to use my custom parcellation scheme. Following the instructions on CMP Docs, first I ran the anatomical pipeline with the default config and got full results.
Then I added my custom p…
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Hello,
We have a question that might have a very easy answer, but we are not able to solve it.
We are working on a project where we want to obtain time series from functional MRI images (volum…
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`/atlases/{atlas_id}/parcellations/{parcellation_id}/features` endpoint does not return data correctly. `description`, `dataset_id`, and other fields are not included on the returned json, but they ar…
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Hello,
I am trying to run the package on an scan that I have. the package run smoothly till it reaches the segmentation where it returns "segmentation fails", i uncommented the shell command so I …
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Hi all,
I wanted to map the Schaefer 1000 parcellation to the vertices of the fs_lr32k surface, however, if I try loading the .dlabel.nii file using nibabel's `nibabel.load()` it returns an error s…