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Hi
It is great to hear the support for long-reads coming to kallisto I would like to introduce it to our pipelines
I have few question regarding running lr-kallisto on ONT dorado basecalled rea…
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**Acceptance criteria**
- [x] Collect test data for the various 10X Genomics library preparation versions that the tool will run validation on.
- [x] Test that the open-source barcode checker tool…
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Hello, thank you for developing this package.
I would like to use DENDRO in my project but I was faced with the question Can DENDRO be used on data generated from a 3'- tag sequencing protocol like…
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It seems that the links to the files pbmc68k_data.rds, all_pure_pbmc_data.rds (1.5GB) and all_pure_select_11types.rds are broken, and that they are no longer on the 10x Genomics site? Is there anywhe…
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Hi,
Do anyone know why I identified no DARs under the threshold of FDR
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I am using Seurat v4.4.0 and I was attempting to load pbmcref data. At beginning, I faced an error during loading the data
`InstallData('pbmcref.SeuratData')`
this was solved by following [#15 ](url…
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Create an endpoint to generate the csv needed by the data sankey diagram. Diagram [here](https://software.docs.hubmapconsortium.org/data-sankey/index.html) example csv [here](https://github.com/hubm…
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# Bug description
Running SVIM on some long read PacBio bam files, I get an error from tabix, that the resulting sequences are unsorted.
```bash
[E::hts_idx_push] Unsorted positions on sequence #1:…
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Hi, BAVARIA is a very interesting tool. But I have some confusions when I reproduce results of integrating cells from 10X Genomics and Cusanovich 2018 datasets. I tried to use and fix your code, but i…
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Thank you for this great tool and congratulations on the recent Nature publication!! I am wondering if you would recommend using CellOracle for spatially-resolved data, or would that violate any of th…