issues
search
eldariont
/
svim
Structural Variant Identification Method using Long Reads
GNU General Public License v3.0
152
stars
19
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
samtools error
#71
ajbarley
opened
5 months ago
0
svim2.0.0 err
#70
vegetableyu
opened
9 months ago
0
all.vcf did not contain BND and insertion sequences
#69
makise58
opened
1 year ago
0
INV score not calculating
#68
avictorsen
opened
1 year ago
0
bioconda install
#67
Noczio
opened
1 year ago
0
pos of interspersed duplication
#66
bakeronit
opened
1 year ago
1
Error question. Please delete.
#65
leone93
closed
1 year ago
0
Multi-sample processing
#64
YahGao
opened
1 year ago
1
Start position
#63
Akazhiel
opened
2 years ago
0
Fail to get the svim_evaluation.zip
#62
SQLiu-youyou
opened
2 years ago
0
[BUG] Unsorted positions on sequence
#61
Irallia
opened
2 years ago
2
Problem with DUP naming. SVLEN is not present in INV calls.
#60
mldmort
opened
2 years ago
0
how many calls should we expect?
#59
woodoo46
closed
2 years ago
5
SVIM 2.0.0 in conda
#58
Akazhiel
opened
3 years ago
3
Reads supporting BND events
#57
Akazhiel
closed
2 years ago
2
Reference allele missing
#56
Akazhiel
opened
3 years ago
2
Add output name options
#55
Akazhiel
opened
3 years ago
1
Reversed start and end of BND
#54
charliechen912ilovbash
closed
2 years ago
1
Confusion about output
#53
cgrootcrego
closed
3 years ago
2
Understand the output?
#52
wenbinmei
closed
3 years ago
1
parameter settings for more support reads
#51
yekaizhou
closed
3 years ago
4
Low number of interspersed duplications?
#50
GuillaumeHolley
closed
3 years ago
1
Improved Documentation
#49
CharlesARoy
closed
3 years ago
2
population call with svim
#48
Chenglin20170390
closed
3 years ago
3
merge the two lines translocation(BND) records into one line
#47
charliechen912ilovbash
closed
3 years ago
2
The genotype of the variants.vcf file were ./.
#46
Xuelei-Dai
closed
3 years ago
1
SVIM tries to use deprecated Numpy feature
#45
InvisOn
closed
3 years ago
1
using svim alignment to genotype, all the tandem duplications show missing value
#44
lx-4199
opened
3 years ago
1
svim alignment error
#43
lukaslee1127
closed
3 years ago
1
what is the recommended annotation tools after SV calling?
#42
charliechen912ilovbash
closed
3 years ago
2
the recommended sequencing depth
#41
charliechen912ilovbash
closed
3 years ago
2
Is SVIM suitable for detecting somatic SV?
#40
charliechen912ilovbash
closed
3 years ago
1
Alignment pipeline error
#39
camilogarciabotero
closed
3 years ago
8
Underflow on variant position?
#38
wdecoster
closed
3 years ago
5
MemoryError
#37
Boer223
closed
3 years ago
3
(Almost) no insertions
#36
LizzieMcDizzie
closed
4 years ago
5
raw reads or corrected reads ?
#35
ptranvan
closed
4 years ago
1
ERROR when using assembly-vs-assembly BAM as input
#34
biozzq
closed
4 years ago
3
Check existence of bam index upfront
#33
SHuang-Broad
closed
4 years ago
2
[Feature request] Expose CLI for customizing batch size
#32
SHuang-Broad
closed
4 years ago
1
Phasing interpretation
#31
javibio-git
closed
4 years ago
4
SVIM breaks with OSError: truncated file in Genotyping step
#30
caspargross
closed
4 years ago
2
FORMAT 'CN' is not defined in the header
#29
zihhuafang
closed
4 years ago
3
SV types in output VCF
#28
shimbalama
closed
4 years ago
3
pysam error
#27
ndierckx
closed
4 years ago
8
Understanding the scoring?
#26
alelim-bio
closed
3 years ago
4
complex events detection
#25
jiadong324
closed
4 years ago
3
Wrong SVLEN values
#24
ricardovialle
closed
4 years ago
4
Suggestion: Add BEDPE as an optional output
#23
Dfupa
closed
4 years ago
4
Q: is it possible to allow users choose between NGMLR Minimap2?
#22
SHuang-Broad
closed
4 years ago
4
Next