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@rcorces I encountered the issue with GeneExpressionMatrix. After installing the ArchR from devtools::install_github("GreenleafLab/ArchR", ref="dev", repos = BiocManager::repositories()), I can succes…
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When I run the code in tutorial data, I found the different heatmap whose marker genes in each cluster was not ordered?What happened? How can I draw the figure like in manual chapter 7.4?
```
marke…
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Hello and thanks for the great tool,
I would like to re-open the [closed bug issue #529](https://github.com/GreenleafLab/ArchR/issues/529) - I am also getting the same problem that my GroupCovera…
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Hello ArchR developers,
I have several ArchRProject objects that require merging. These ArchR objects originate from distinct batches of arrow files and experiments from 10x multiome kits. It's imp…
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I just wanted to add some information about the addGeneExpressionMatrix and import10xFeatureMatrix functions in case anyone else is running into the same issue I had. The error message I kept getting …
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Hi Authors,
Could you please provide the PBMC sample scRNA rds object and scATAC archR object used in the preprocessing_scRNA_scATAC.ipynb notebook?
It would be good to have with this so we can…
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**Attach your log file**
[ArchR-addGeneIntegrationMatrix-309a7ba7d4af-Date-2024-01-11_Time-01-44-22.log](https://github.com/GreenleafLab/ArchR/files/13906108/ArchR-addGeneIntegrationMatrix-309a7ba7d4…
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Hi,Dear software creator,
I encountered two types of errors while using createArrowFiles.But,I used the tutorial dataset, and everything worked fine.And than,
I have searched some similar issue di…
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To install ArchR, I created a conda environment and installed R4.3.2 as well as related packages. Since the server I use can not connect Internet, I can only download zip file from https://github.com/…
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### Description
Right now `angr management` has multiple soft dependencies:
In `interaction_view.py`, for example, we soft require: `archr`, `keystone-engine`, `nclib`, and `slacrs` (though, thi…