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I imagine a wide problem in using HPC systems is not knowing how much memory or walltime to allocate. I imagine this not knowing the right amounts (of memory especially) causes huge amounts of wasted …
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I have a long running future that runs remotely. It gets killed after ~2hours. I've run future in debug mode and I've looked at some of the logs on my system. There seems to be a point where the syste…
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Add mechanism for specifying required and preferred resources / tags, e.g.
```r
f
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I have a loop like this:
```r
for (i in 14:11) {
f
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I'm using `future.batchtools` via `drake`, and just got my first plan running on the cluster. It seems to take about one minute for each job submitted, and since I'm trying to submit several hundred …
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In the sample template for LSF the logfile is set as
```
#BSUB -o
```
That works, but means that if the jobs are submitted as jobarray the log file will concatenate the output of all jobs in that a…
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If I understand correctly the default in batchtools is to not use job arrays. why is that? that seems strange to me, as it is a lot faster on SLURM to call sbatch once with a job array (with say 100 e…
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i.e. a wrapper around callr with convenient options for setting lib path.
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@mllg As you say in wlandau-lilly/drake#113, there is no `*.tmpl` file that works on all installations of a given job scheduler. So as well as the [template files](https://github.com/mllg/batchtools/t…
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Researchers in my lab use conda to manage all bioinformatics software, including python and R packages. We have an available SGE cluster, and to submit jobs to the cluster that require a specific cond…