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I'm well aware that the ModelSEED team is planning a separate provenance for storing compound structures that allows the biochemistry objects to be operated independently without slowing down, and som…
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**Pathway & Process**
Specifically in the _context of biology and chemistry_:
- are these synonyms or do they mean different things?
- if they are different, how are they related?
**TL;DR**
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Have a redirect link for https://glygen.ccrc.uga.edu/frontend/home/
Something we can put on a slide
should be https://hivelab.biochemistry.gwu.edu/biomarker-portal
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There's three slightly different molecular structures that any one compound could have. I'm also aware that there is an intention of having different compound uuids to represent various states of the…
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## Information
- Oike, H. (2017). Modulation of circadian clocks by nutrients and food factors. Bioscience, biotechnology, and biochemistry, 81(5), 863-870.
- https://doi.org/10.1080/09168451.2017.1…
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I know how to update properties of an object within the biochemistry, but this is the first time I've tried updating the uuid:
```
my $rxn=$biochem->getObjectByAlias('reactions','R00001','KEGG');
for…
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I took this dataset from ecosis: https://ecosis.org/package/hyperspectral-leaf-reflectance--biochemistry--and-physiology-of-droughted-and-watered-crops
@serbinsh or @regnans could you check if the …
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As you can see by the 3 examples bellow, due to misspell issues I am getting growth... the correct case is the 3rd one and as you guys can see no growth is observed.
Could a check for misspelling be …
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It's possible to create a new object from scratch in the code, or, as per recent thread, to clone an object, but, initially without a parent biochemistry, if id() is run, this error is thrown:
```
Ca…
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I don't have a problem with aliases corresponding to more than one reaction/compound, like "Enzyme Class" where each EC number can be associated with multiple reactions.
However, the current biochemi…