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See slack discussion:
> **Gitte Decat** 12:37
> i dont have an option to download different taxon_ids, if i download the all organisms file, it filters on a certain taxon_id that is given! is that…
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I was going to through the adapter file for open-targets dataset in which I found that the `MouseTargetNodeField` has de-duplication (dropDuplicates()) on rows. On deeper investigation, I found that t…
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For instance, in CKG, we have distinct mutations:
```
sequence variant:
represented_as: node
preferred_id: [clinically relevant, known, somatic]
label_in_input: [Clinically_relevant_variant, Kn…
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This import:
https://github.com/GitteDecatBIT/Internship_VIB_2024_GitteDecat/blob/10377e88c2c2285cafcace10aaa289230a79214c/Integration_Of_IRefIndex_In_Biocypher/template_package/adapters/IRefIndex_…
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These functions seem to be pure (they don't have side-effects; just return a value) but you're ignoring the return value:
https://github.com/GitteDecatBIT/Internship_VIB_2024_GitteDecat/blob/10377e…
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In [create_knowledge_graph.py](https://github.com/GitteDecatBIT/Internship_VIB_2024_GitteDecat/blob/main/Integration_Of_IRefIndex_In_Biocypher/create_knowledge_graph.py#L67-L73) you download the file …
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This is a script that drives creation of the knowledge graph. It has a single parameter, the `taxon_id`. This should not be hard coded, you can instead get it from `sys.argv[1]`.
https://github.com…
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@cadmiumkitty
Hi, I am trying to convert pandas dataframe(.csv format) to rf graph in .ttl format.
While converting, I am facing an issue:
NameError: name 'NamespaceManager' is not defined
The c…
a1012 updated
3 months ago
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There should be an async option since some API request take long to respond and we may have 14000 more requests to make which is a real case in KEGG database. I tried to implement ```__await__``` meth…
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Hi,
Thank you for developing this wonderful project. I have the CKG running in neo4j and would like to run the script to import CKG to BioCypher. There's an error looks like biolink-model.owl.ttl c…
axh24 updated
6 months ago