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Checked GMT files: http://structuralbiology.cau.edu.cn/PlantGSEA/download.php
# - GO (Gene Ontology) gene sets : http://structuralbiology.cau.edu.cn/PlantGSEA/database/Osa_GO
# - Gene Family ba…
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Can some meaningful annotation be added to the description field? Perhaps being able to download the gene information (HUGO gene name or function) from biomart using the gene names in the first field?
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I am tired to run RSEQREP on local Ubuntu server.RSEQREP AWS AMI,RSEQREP Docker Image.
**sh setup.sh**
Loading required package: methods
Performing sanity checks on configuration options
Parsing A…
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Currently frustrated when count matrix only has ENSG id, be it from ensemble or gencode
Is it possible for automation of ENSG conversion to HGNC symbol
Currently using biomart to identi…
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It's possible to get Uniprot Accession numbers out of BiomaRt. Writing a vignette or at least a script to demonstrate this would be very helpful.
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With a fresh install on a Windows machine, I needed to install the BiocManager R package before several others would install including tximport, deseq2, and biomaRt. I suggest adding it to the pacman …
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Wire up the RESTful calls for HGNC, Biomart and Cellbase (in that order of returned data). Allow for retries and graceful degradation if no reply.
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Thanks for always providing us with useful tools. I am doing a tutorial on the glioblastoma demo data on your page.
I get an error at getGenePosition.
Here is my code and error display.
> h…
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Hello! I am running into an issue with `emase-zero` as implemented in `kbchoi/emase:latest`, getting the error:
`ERROR LOADING TRANSCRIPT LENGTH FILE ; UNKNOWN HAPLOTYPE NAME: PAR`
The issue is th…
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Hi,
Regarding the @tropfenameimer comment on the build of Gallus gallus cisTarget database issue #4, I tried to take similar steps for building pig cisTarget database.
First, I got the regulato…