Neurosurgery-Brain-Tumor-Center-DiazLab CONICS issues

Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS

CONICS: COpy-Number analysis In single-Cell RNA-Sequencing

73 stars 28 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Can not find SUVA_CNVs_BIC_LR.txt

#46 jianyangdu opened 3 months ago
0
Error in hclust(d, method = method) : size cannot exceed 65536

#45 wwYinYin opened 5 months ago
0
CONICS Sample Data Availability

#44 elisafazz opened 1 year ago
0
Segmentation fault

#43 archana433 opened 1 year ago
0
Error: Unexpected format to the list of available marts.

#42 sciencepeak opened 1 year ago
0
Error in plotAll

#41 marie2T opened 1 year ago
2
Error in getGenePositions

#40 TM9013 opened 2 years ago
1
Few tumor cell

#39 sunshine1126 opened 2 years ago
0
chromosome arm positions of mouse?

#38 Li-ZhiD opened 2 years ago
1
detection of CNV in germlines

#37 lmanchon opened 3 years ago
1
getGenePositions parameter got the wrong location information

#36 sunshine1126 opened 3 years ago
3
CONICSmat install failed

#35 Sumithrasank closed 3 years ago
0
Can CONICS be used with 3'- tag sequencing methods ?

#34 moutazhelal opened 3 years ago
1
Where can I get the chromosome arm positions file for mouse?

#33 smk5g5 opened 3 years ago
0
Conicsmat throws an error for filterMatrix()

#32 biobug16 opened 3 years ago
0
Issue about CONICSmat in getGenePositions function

#31 GalaxyYang opened 4 years ago
0
CONICS for scATAC-seq

#30 camiel-m opened 4 years ago
0
unable to install CONICSmat

#29 liron27 closed 4 years ago
0
error on plotall

#28 FuqianShi closed 4 years ago
1
error on plotall

#27 FuqianShi closed 4 years ago
0
How to check amplification of a specific gene using CONICSmat?

#26 biobug16 closed 4 years ago
2
Issue Running CONICSMat Tutorial Due To Deprecated SCRAN Function

#25 MayaTalukdar opened 4 years ago
6
How can we use RPKM or TPM values for prediction of CNVs or tumour cells?

#24 avln24 opened 4 years ago
0
Fixed typo on line 123

#23 kant closed 3 years ago
0
How can we set a seed to reproduce the same figure with plotHistogram() in CONICSmat?

#22 biobug16 opened 4 years ago
0
Can we select cells with a specific CNV?

#21 biobug16 opened 4 years ago
0
Can or should we do batch-correction before parsing the log2cpm to CONICSmat?

#20 biobug16 opened 4 years ago
0
Questions about predicted cell types as an optional input for CONICSmat and optimizing number of clusters for heatmap

#19 avln24 opened 4 years ago
0
How can we use tpm values provided in GEO datasets for CNV or tumor cell prediction

#18 biobug16 opened 4 years ago
2
Heatmap of the posterior probabilities highlights cells in red (down-regulation of 1p/19q) and not in blue (up-regulation)

#17 biobug16 closed 4 years ago
2
How to process the natural log values from Seurat into log2(CPM/10+1)

#16 biobug16 closed 4 years ago
3
getGenePositions() in CONICSmat can not deal with gene names in ENSEMBL format

#15 biobug16 closed 4 years ago
1
fail to install CONISmat

#14 RitataLU closed 4 years ago
1
Questions about the input expression matrix and threshold used in plotChromosomeHeatmap

#13 YiweiNiu opened 5 years ago
3
error in classify tumor cell and nontumor cell?

#12 zhumengyan opened 5 years ago
6
chromosome arm positions hg19

#11 ccruizm closed 4 years ago
1
Syntax issues on strings 38 & 91

#10 kant closed 5 years ago
1
Error in string.to.colors() in Tutorial

#9 erin-d closed 4 years ago
3
Error in tutorial

#8 romagnolid closed 5 years ago
5
error on "plotChromosomeHeatmap" function within 10x scRNA data

#7 helianthuszhu closed 5 years ago
1
if the package can be applied to 10X scRNA-Seq data

#6 zhumengyan closed 5 years ago
2
remove http prefix

#5 chrisamiller closed 6 years ago
1
Heatmap visualization and chromosome position file

#4 gufranca closed 5 years ago
12
Confusion about the calcNormFactors

#3 ysbioinfo closed 6 years ago
9
error when connecting to BioMart

#2 ysbioinfo closed 6 years ago
5
extract the samples with CNV

#1 QSong-github closed 6 years ago
5