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NCLscan depends on novoalign from novocraft. Novocraft's software are not Free/Libre Open Source; they require purchasing a license for v4 and for parallel processing with v3.
Biowulf has such a li…
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I am running `hifiasm` of ~1.4GB genome using both the ONT and PacBio HiFi data. The program is stuck at `[M::ha_pt_gen::21255.245*7.18] ==> indexed 5753798835 positions, counted 251767750 distinct mi…
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Hello,
Would it be possible to add to the RSEM its feature to generate a counts matrix for the isoforms data?
Within the RSEM documentation it states it has the ability to do this using the follow…
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@kopardev found jobs will sometimes fail spontaneously and work on the re-run. It seems to be a file latency issue?
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Match [GDC](https://gdc.cancer.gov/about-data/gdc-data-processing/gdc-reference-files)
- include decoys
- include viruses
Will need to
- [x] recreate reference files for all human (h38/hg19) ge…
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Ideally, the AFNI_COMPRESSOR should be able to be set to pigz. @afni-dglen thinks it will work. But @afni-rwcox in doc/README/README.environment says it fails randomly. I will look into.
leej3 updated
4 years ago
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Related to #52 and possibly #51
If platform is biowulf or frce, use the shared dir for the singularity cache instead of a local dir. https://github.com/CCBR/RENEE/blob/22a558115a7edd0893023cbb9e3b…
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https://github.com/CCBR/CHAMPAGNE/blob/d06ce0f24de44273aed31a9d00403f4e41e67f8d/nextflow.config#L19
at least on biowulf
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Hello,
I am using the latest version (3.07.01) of Percolator and trying to run the RESET algorithm using the following command:
percolator -Y --reset-algorithm --num-threads 32 --subset-max-train …
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### Description of the bug
do I need to use my local version of R?
### Command used and terminal output
```console
Hi guys, I have tested hicar 1.0.0 "nextflow run nf-core/hicar -r 1.0.0 -profile t…