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The data set you mentioned i.e. IXI dataset has T2 available. However, mask is not available. Where to get the mask?
Also, the link you posted for MSLUB is broken. I couldn't see BRATS2021 data as …
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Fase di ricerca del miglior setting per GAT o GraphSage-pool.
Una volta trovato il setting migliore, salvare il modello e generare predizioni sul test set salvando le seguenti metriche:
- node-w…
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i have seen this in #656. I dowloaded the pretrained of BraTS2021 and predict on nnUNetv1. I found the following eroor, how can i fix this. I use default_trainer = "nnUNetTrainerV2"
raise Runtime…
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Hi, I would like to try using CarveMix on BRATS 2021 dataset. Can you please describe the steps I need to follow to make it work with nnU-Net? You wrote that we need to determine the data partition b…
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Hello, I'm reproducing your code recently. I don't quite understand how to write the JSON file of brats2021. Can you upload a copy for our convenience?
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Hello, I'd like to ask if you can provide the treatment of liver or pancreatic tumors. The code shows the treatment of brats2021 data. I need to deal with the segmentation of gastric cancer data. The …
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Hi,
I can use your docker image to generate the segmentation result for a single sample. May I ask that how can I calculate the segmentation metrics like Dice score and HD95 score of ET, TC and WT …
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Hi, thank you for your great work.
In the paper, you said that you train and evaluate the Swin UNETR model on the BraTS 2021. I see in the repo has 2 folders BTCV and BRATS2021 but the BRATS2021 is…
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When I run the task500_brats_2021.py file, I get an error at line 799:”TypeError: my_evaluate_folder() missing 1 required positional argument: 'gt_folder'”
What parameters should be written here?
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Problem summary
I am working with BraTS 2021 dataset and I am not using patch-based training. The issue appear…