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Hi Brad -
I am trying to run bcbio on tumor-only sample. It ran successfully and provided gemini annotated files for freebayes, vardict and varscan. However, the vcf files in the individual folder…
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Hi @DavidAnson
I cannot seem to get this line of code to clear the test indicated in the title of this issue. Funny thing is, the exact line of text is used earlier in the document, but seems to av…
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In [naaccr-xml][1], it's `dateOfBirth` but PCORNet CDM convention is `DATE_OF_BIRTH`.
The current design converts to PCORNet CDM conventions.
[1]: https://github.com/imsweb/naaccr-xml
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Create mappings between KF and FHIR Phenopackets models, using [this spreadsheet](https://docs.google.com/spreadsheets/d/19tQnE75UzvP_k29D-QprbsJ-6ZO2PdUmKPiWHKkcTEg/edit?usp=sharing). This is part of…
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When two lines have the same "title" AND "year" AND "authors" keep only one (the first? the most complete?)
Below the three key in ISI and SCOPUS:
- title --> ISI = TI / Scopus = Title
- year -->…
tommv updated
3 years ago
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- [x] (1) Output charts: We need to identify all of the output charts that are not in the model diagram but show up in the output charts for each model for the guides
**See below for attachment wit…
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* Configuration for database location/creds
* Persist intermediate storage in warehouse
1. Drop extract and transform tables for the current study from the warehouse
2. Load new extract and tra…
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**Which repo (e.g., tx-logging)?**
pds, deliverable 5.1
**Expected Behavior**
provides simple /config and /gudance endpoints to dashboard developer, abstracting away all the calls to FHIR, maper,…
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Discuss infrastructure for the implementation of a data warehouse for D3b reporting. We need to discuss the following, but not limited to, items:
- Purpose
- Who are the audience of the data wa…
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The Gateway layer stitches independent services together into ans ingle access point for the Argo Platform UI. The Gateway later coordinates data from:
1. Program Service
2. Clinical Warehouse
3…