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The documentation (https://opencobra.github.io/cobratoolbox/stable/index.html) seems outdated (e.g. installation instructions do not mention the newest version of MATLAB) and also broken (e.g. the ico…
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In the tutorial: [https://opencobra.github.io/cobratoolbox/latest/tutorials/tutorialOptGene.html]
I first have an a problem with the `selectedGenelist` where the first cell is empty. I "resolved" t…
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*Please include a short description of problem here*
I downloaded Recon3DModel from vmh.life and loaded it into MATLAB but when i run the verifyModel function i run into this error only in MAC OS it …
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Just have a fresh install of irisman to have start option and when it's says choose for folder game click no the 2times and when it's says it will create folder irisman/game just click previous and th…
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I am trying to download CobraToolbox for the first time. This is the error I get when I try to run initCobraToolbox:
Checking if git is installed ... Done (version: 2.29.2).
> Checking if the r…
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Hello, Thank you for your guys' work. But when I running GPMM, something puzzling happened.
1. I have installed Matlab, Cobra toolbox and FastMM;
2. I downloaded GPMM package, and enter the dictio…
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Hi
I have ran a microbiome modeling data with 95 samples and about 200 taxons.
But it's about 3weeks that is performing FVA with CPLEX 128 (fvatype=1) on 1 sample without any changing. Matlab shows …
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When initializing dynamic FBA it assumes, that exchange reactions which can take up metabolites and are assigned a 0 concentration will be non limiting.
Essentially, those initial concentrations are…
tpfau updated
5 years ago
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I am currently manipulating a model to add a new compartment, so the structure looks like this:
[c] [e] (new ) [NewComp] (new ) []
1) modified original EX rea…
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This is a spin of from #6, concerning only the SBML COBRA ID conversion.
Current status is two options:
A: Define a clear conversion scheme between COBRA-ID and SBML ID
B: Add the `fbc` label as a…
tpfau updated
6 years ago