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Hi samtools,
I'm trying to figure out why `samtools mpileup` gives different reference sequences for different bam files given that the bam were generated from alignment to the same reference genom…
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# TL;DR
I suspect that `@gmod/faidx-js` incorrectly calculates the `LINEBASES` (per the [fai index spec](https://www.htslib.org/doc/faidx.html)) using the **last** line of a FASTA record (which is …
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I am trying to read remotely a CRAM file stored in a GCE bucket that is configured as user pay:
```
(google-cloud) mgrau@z25:~$ samtools view -H gs://bucket_name/file.cram
[E::hts_open_format] Fa…
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As a user
I want to be able to download files reencrypted with my public crypt4gh key.
A/C:
- [ ] A way of identifying if files are requested as decrypted or reencrypted
- [ ] Reading public keys …
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### Summary
I am trying to directly use the `wasm-bindgen-test` crate because I want to make some changes in it.
```
[target.'cfg(target_arch = "wasm32")'.dev-dependencies]
wasm-bindgen-test =…
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#### Are you using the latest version of [samtools](https://github.com/samtools/samtools/releases/latest) and [HTSlib](https://github.com/samtools/htslib/releases/latest)? If not, please specify.
(ru…
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#### Are you using the latest version of [samtools](https://github.com/samtools/samtools/releases/latest) and [HTSlib](https://github.com/samtools/htslib/releases/latest)? If not, please specify.
(ru…
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I am experiencing a very peculiar issue. I am using jupyter notebook to test some R code that calls tabix to query some files stored in S3 buckets.
The following command is an example of what I wou…
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### Expected Behavior
I'm using the [LocalEGA testsuite](https://github.com/EGA-archive/LocalEGA/tree/master/tests#localega-testsuite)
### Current Behavior
It shoud accomplish all the selecte…
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#### Are you using the latest version of [samtools](https://github.com/samtools/samtools/releases/latest) and [HTSlib](https://github.com/samtools/htslib/releases/latest)? If not, please specify.
Y…