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The Docker container tutorial isn't working for me. I successfully ran:
`docker run --rm -it -v `pwd `:/data trinityctat/ctatfusion:latest bash`
Once the container was pulled, I successfully ran…
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Dear @brianjohnhaas
First of all, Thank you so much for the great tool!
Currently, I keep seeing this error message below during the prep_genome_lib.pl
> ** Error, not able to find file: pfam_…
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Dear,
We succesfully implemented CTAT-splicing in our STAR-fusion pipeline.
**1) we pick up all our relevant fusion genes using STARfusion**
**2) we correctly picked up METx14del,** without fal…
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Hi, thanks for your useful software, and we faced a interesting issue, maybe you can give us some advice; we have run ctat_vif to detect virus-host integration sites in both DNA and RNA sequencing dat…
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Hi,
I just observed that STAR_fusion is giving the following error when I kept the "ctat_genome_lib_build_dir" as a symbolic link in the current directory.
`Error, cannot locate genome_lib_dir:…
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@DannyWeitekamp and I ran into an issue with done button presses in CTAT, which canonically send a -1 as the input to their actions. In agents with some kind of math knowledge this triggers a how sear…
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Error, cannot locate star index at /home/mist/Mouse_M16_CTAT_lib_Feb202018/ctat_genome_lib_build_dir/ref_genome.fa.star.idx at /mistgpu/miniconda/lib/STAR-Fusion/STAR-Fusion line 508.
How to solve …
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Can anybody in this forum let me know a comprehensive detail of what other cognitive tutors are available worldwide which are successfully running and in which counteries
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Hello ctat team,
I am trying CTAT v3.2.0.
After I run it, there were ~.vcf.gz and ~.XGBoost-classifier.vcf.gz.
I think the raw GATK result is ~.vcf.gz
(If I am looking for the variants from the…
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Hello,
I used the STAR-Fusion v1.9.0 to built my genome lib with prep_genome_lib.pl, but no matter what version genome I used, all of them reported the following errors:
**died with ret 9 No such…