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(UPDATE: Unable to repro, but see comment further down.)
I now know why one of my perfect contigs is shorter than the other in my 5k test. Some alignments have a 1-base deletion, due to polishing. Th…
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was: Process getting stuck now at fc_consensus
We have a large cluster that we are running FALCON on (250+ nodes) and now keep running in to new problems, some due to the configuration of the cari…
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Hi Authors -
I have using poreseq to error correct and assemble minion data for a bacterial genome.
I have a fasta file generated from the fast5 files. I ran it through the first step which is alig…
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Hi, admin,
I have downloaded and installed the latest version (v0.3.0) Falcon integrated release. The test dry run seemed OK, so I followed the wiki instructions (https://github.com/PacificBioscienc…
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We are experiencing a seg fault with LA4Falcon on our CentOS 6.9 server, using Falcon from pitchfork.
The fault is happening in the `0-rawreads/preads/cns_00170` task:
```
$ cat c_00170.sh
#!/b…
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Hi, Developer,
I had a very weird error.
When I ran Falcon on a set of 8 SMRT cells, job done, no problem. However, when I ran Falcon on 25 SMRT cells (including the previous 8), the job got …
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I kept on restarting Falcon but there are always 6 jobs that kept on failing. It didn't seem to show any error but I noticed that there's something similar in the stderr file of the jobs.
..
raw_re…
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Hello Falcon team,
I have a weird issue. A couple of weeks ago I had success in download Falcon-integrate ("The easy way") and run the pipeline for only one SMRT cell in order to define the Falcon par…
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`/usr/local/time` is used for benchmark purpose. we current set it default to `bash`'s internal `time` command. If no benchmark necessary, we can drop if. If benchmark is needed, then the `/usr/local…
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Hi poreFUME developers, we are trying to use your code for analyzing some samples. But, after running everything as is explained in the INSTALL file, we are not able to get it installed properly. Most…