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Hi, I always get some trouble as follow when I download data model by `deepbgc download`.
```shell
:~$ deepbgc download
_____ ____ ____ ____
| _ \ ___ ___ ____ | __ ) …
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Hi I'm trying to implement this pipeline in my work, but I'm facing problems. The pipeline was conda installed according with instruction in you GitHub. Here's the error:
$ deepbgc --help
Tracebac…
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New installations of deepbgc fail because of the installed new versions of TensorFlow:
```
root@a492456632b1:~# pip install deepbgc
Collecting deepbgc
Using cached deepbgc-0.1.18-py3-none-any.…
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I suggested this in a closed issue discussion, but I'll post it as a request. The hmmscan portion of deepbgc takes a LONG time, and is computationally unnecessary, I believe, for what you're trying to…
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Can the cpu utilisation be improved w.r.t hmmscan step, to accelerate the analysis of metagenome data?
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I am a Ph.D. student metabolomic/specialized plant metabolic responses to pathogens.
your deep learning approach applied to the BGC is very innovative. I'd like to apply it to my plant data to pr…
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Part of the error log:
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ERROR 19/11 15:51:37 rsplit() takes no keyword arguments
Traceback (most recent call last):
File "/mnt/volume/miniconda/3/lib/python2.7/site-packages/deepbgc/…
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For this warning, while I am analysing metagenome contigs, can I change some deepbgc parameters to incorporate all the results in plot.
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Error LOG part:
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== Prodigal Error: ================
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PRODIGAL v2.6.3 [February, 2016]
Univ of Tenn / Oak Ridge National Lab
Doug Hyatt, Loren Hauser,…
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It would be nice if deepbgc allowed gzip'ed genome fasta input, which is allowed by Antismash v5. At least with deepbgc v0.1.13, the following error occurs if a gzip'ed fasta is provided as input:
…