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Merck
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deepbgc
BGC Detection and Classification Using Deep Learning
https://doi.org/10.1093/nar/gkz654
MIT License
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[Question] How can I use precomputed genes via GFF format with DeepBGC?
#101
jolespin
opened
2 days ago
0
DeepBGC failed with ValueError: Grouper for 'sequence_id' not 1-dimensional
#100
marlaux
opened
2 months ago
0
installing deepbgc
#99
kadesu
opened
3 months ago
1
ValueError: End location (8780) must be greater than or equal to start location (9428)
#98
PKU007
opened
6 months ago
0
deepbgc info crash - same as Issue #39
#97
jfoldi81
opened
7 months ago
0
User Warning
#96
EmiCA22
opened
7 months ago
0
ImportError: Missing required dependencies ['numpy']
#95
chengyou96
closed
7 months ago
1
Looking for individual genes
#94
XT33KAKA
opened
10 months ago
0
Use https instead of ftp protocol for Pfam database download
#93
jasmezz
closed
10 months ago
1
Use https for pfam download
#92
prihoda
closed
10 months ago
3
running "deepbgc info" issue
#91
AledHe
opened
1 year ago
0
Bugs for protein input
#90
Xinpeng021001
opened
1 year ago
1
Hmmer and Prodigal Package Access Problem
#89
plouisross
opened
1 year ago
1
Could deepBGC be used for special gene clusters?
#88
Xinpeng021001
opened
1 year ago
0
what "inhibitor" means???
#87
esraagithub
opened
1 year ago
0
fit_generator
#86
wawpaopao
opened
1 year ago
0
how to create negative samples?
#85
wawpaopao
opened
1 year ago
1
installation error
#84
esraagithub
closed
1 year ago
1
how to get a cluster?
#83
wawpaopao
opened
1 year ago
0
WARNING: Tensor flow backened message when running deepbgc info into the CLI
#82
zagonzalez
opened
2 years ago
1
run Deepbgc in fungal genomes
#81
Juliana-Soto24
closed
1 year ago
1
Visualization
#80
OwenNaicker
opened
2 years ago
1
fix get_proteins_by_id to avoid overwriting protein_id features
#79
LuisFF
opened
2 years ago
0
bug in get_proteins_by_id affecting pfam annotator
#78
LuisFF
opened
2 years ago
4
Update Pfam database
#77
jasmezz
closed
2 years ago
1
Where I can get the code of e-deepBGC?
#76
liangyong1991
closed
2 years ago
1
Installation Failure
#75
NiklausChung
closed
2 years ago
5
Update setup.py
#74
prihoda
closed
2 years ago
0
Error during detector training
#73
esraagithub
opened
2 years ago
5
How to get antismash and deebgc cobined svg?
#72
MenusGarg
opened
2 years ago
0
I am getting an issue regarding memory, how to solve this ?
#71
devarajarun
opened
2 years ago
0
Bump numpy from 1.16.1 to 1.21.0
#70
dependabot[bot]
opened
2 years ago
0
Require hmmlearn < 0.2.7
#69
prihoda
closed
2 years ago
0
Fix tests for geneborder HMM
#68
prihoda
closed
2 years ago
0
DeepBGC failed with ValueError: missing molecule_type in annotations
#67
chengyou96
opened
2 years ago
4
Missing required dependencies ['numpy'] with any version of deepbgc
#66
acelik
closed
2 years ago
1
deepbgc pipeline does not seem to use more than 2 cores?
#65
bkm23644
opened
2 years ago
2
leave-class out validation
#64
pmobio
closed
2 years ago
1
deepbgc output result tsv file
#63
APengs494
closed
2 years ago
1
deepbgc download error
#62
APengs494
closed
2 years ago
0
Deepbgc installation through conda
#61
ebervilla
opened
3 years ago
5
Cope without Bio.Alphabet for Biopython 1.78 onwards
#60
peterjc
closed
3 years ago
3
Update util.py
#59
gkapatai
closed
3 years ago
0
Automatically re-annotate PFAM domains if they are incompatible
#58
susheelbhanu
opened
3 years ago
3
gbff GenBank file format is not recognised
#57
gkapatai
closed
3 years ago
2
Installing deepBGC
#56
planctoqueen
opened
3 years ago
8
Fails with deepbgc. ImportError: cannot import name 'ChainMap'
#55
APengs494
closed
3 years ago
5
Installing 0.1.26 with Anaconda
#54
danudwary
opened
3 years ago
2
DeepBGC failed with Exception: Unexpected error detecting protein domains using HMMER hmmscan
#53
Bollie15
closed
3 years ago
2
ERROR: Could not find a version that satisfies the requirement tensorflow<2.0.0,>=1.15.4 (from deepbgc)
#52
Bollie15
closed
3 years ago
3
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