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* dmriprep version:dMRIPrep v0.5.0
* Python version:3.8
* Operating System:ubuntu
### Description
Hello
I am converting the data to BIDS format.
I tried the following command line:dmriprep…
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While running the tool with the command: `pyAFQ demo_config.toml`, where the `demo_config.toml` file only contains a path for my `dmriprep` directory, I get the following error. I have installed the l…
gkiar updated
2 years ago
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The output tractograms I am getting with version 0.12 are very different from those I had in version 0.8. In particular, the number of fibers and tracts identified is substantially less than before an…
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An index error is thrown here when BIDS is improperly specified such that no files are found:
https://github.com/yeatmanlab/pyAFQ/blob/da585b2af6d2416d3b88789e4c921ac791c7a58a/AFQ/api.py#L323
Inst…
36000 updated
2 years ago
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Hi! I work with Drs. Jensen and Helpern at MUSC and I've been attempting to run AFQ for one of our studies. The restriction here is that we want to use tensors produced by [PyDesigner](https://pydesig…
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I am currently working with dwi data that has been preprocessed in pydesigner and would like to use the scalars output by pydesigner in pyafq. However, when I format the ScalarFile objects for my scal…
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* dmriprep version: 0.5.0
* Python version:
* Operating System:
### Description
With the latest docker image, run gets completed with no errors. But no output dwi directory gets created. Only …
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I have processed a handful of subjects and receive the same error with each of them. I also saw the same error on neurostars (https://neurostars.org/t/query-regarding-dmriprep/18951?u=mike_schmidt), w…
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**Describe the bug**
Hello
I have a problem installing dmriprep:
when i type the make docker command, the terminal loops infinitely, displaying this message.
Warning: you have pip-installed depe…