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It would be nice to enable users to put a label on tool's inputs or outputs in order to better identify the role of inputs/outputs. As an exemple, we can imagine a alignment tool with two inputs with …
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Hello all,
I am running iqtree v1.6.10 to calculate a snp dataset, but it keeps reporting errors.
command
**$ /ds3200_1/proc/iqtree-1.6.10-Linux/bin/iqtree -s all.LDfilter.thinned.sort.sequences.…
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### Discussed in https://github.com/scikit-bio/scikit-bio/discussions/1973
@mortonjt @wasade Will appreciate your thoughts!
Originally posted by **qiyunzhu** March 17, 2024
Here I am descri…
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Dear Wayne,
Every now and then I'm looking for freely available molecular biology software, e.g. to give it to our beginner students or use it by myself.
For my own little problems I'm actually u…
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May I know if it is possible to get the dataset used in the paper? or is there any script can be used to preprocess the dataset?
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Hi there!
IQ-TREE2 segfaulted on me for a large file.
Top of logfile:
```
IQ-TREE multicore version 2.0.3 for Linux 64-bit built Dec 20 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olg…
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I downloaded the docker version for hivmmer and I noticed that the latest docker version is 0.1.2, will the latest version (0.2.0) be on docker anytime soon?
Also, I noticed that I should be buildi…
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Hi Dr. Girgis,
Thanks for this interesting package and I'm really excited about it. I installed Meshclust and could run some of the example data to completion easily (keratin_query.fasta). Unfortu…
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Hi,
I successfully run orthofinder using the protein sequences, but I get an error when I run it again using the nucleotide sequences from the same species.
I have DNA sequences for 71 species. Th…
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Hi Sungsik,
Thank you for creating this program. I would love to try it out but I am having some troubles uploading my sequential phylip file.
Here is what the first few lines look like.
86 …